Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Scn11aQ9R053 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Scn11aQ9R053 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Scn11aQ9R053 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Scn11aQ9R053 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
Scn11aQ9R053 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Scn11aQ9R053 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC21.94■■□□□ 1.1
Scn11aQ9R053 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Scn11aQ9R053 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
Scn11aQ9R053 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
Scn11aQ9R053 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Scn11aQ9R053 Gm37292-201ENSMUST00000192062 758 ntBASIC21.93■■□□□ 1.1
Scn11aQ9R053 Gm10517-202ENSMUST00000192970 758 ntBASIC21.93■■□□□ 1.1
Scn11aQ9R053 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Scn11aQ9R053 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Scn11aQ9R053 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Scn11aQ9R053 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
Scn11aQ9R053 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
Scn11aQ9R053 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Scn11aQ9R053 Gm6433-201ENSMUST00000118634 875 ntBASIC21.92■■□□□ 1.1
Scn11aQ9R053 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Scn11aQ9R053 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Scn11aQ9R053 Gm43213-201ENSMUST00000151866 1790 ntBASIC21.92■■□□□ 1.1
Scn11aQ9R053 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Scn11aQ9R053 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Scn11aQ9R053 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Scn11aQ9R053 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
Scn11aQ9R053 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC21.92■■□□□ 1.1
Scn11aQ9R053 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Scn11aQ9R053 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC21.91■■□□□ 1.1
Scn11aQ9R053 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Scn11aQ9R053 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC21.91■■□□□ 1.1
Scn11aQ9R053 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
Scn11aQ9R053 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Scn11aQ9R053 Gm42545-201ENSMUST00000202755 922 ntBASIC21.91■■□□□ 1.1
Scn11aQ9R053 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
Scn11aQ9R053 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
Scn11aQ9R053 Gm45906-201ENSMUST00000208911 1430 ntBASIC21.9■■□□□ 1.1
Scn11aQ9R053 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Scn11aQ9R053 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Scn11aQ9R053 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Scn11aQ9R053 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Scn11aQ9R053 Gm6728-201ENSMUST00000178117 1065 ntBASIC21.9■■□□□ 1.1
Scn11aQ9R053 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC21.9■■□□□ 1.1
Scn11aQ9R053 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
Scn11aQ9R053 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Scn11aQ9R053 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Scn11aQ9R053 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Scn11aQ9R053 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC21.89■■□□□ 1.1
Scn11aQ9R053 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
Scn11aQ9R053 Mir6349-201ENSMUST00000184059 97 ntBASIC21.89■■□□□ 1.1
Scn11aQ9R053 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Scn11aQ9R053 BC021767-201ENSMUST00000126387 1716 ntBASIC21.89■■□□□ 1.09
Scn11aQ9R053 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Scn11aQ9R053 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
Scn11aQ9R053 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Scn11aQ9R053 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC21.89■■□□□ 1.09
Scn11aQ9R053 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Scn11aQ9R053 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Scn11aQ9R053 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Scn11aQ9R053 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
Scn11aQ9R053 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC21.89■■□□□ 1.09
Scn11aQ9R053 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
Scn11aQ9R053 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Scn11aQ9R053 Gm38345-201ENSMUST00000192635 1748 ntBASIC21.88■■□□□ 1.09
Scn11aQ9R053 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Scn11aQ9R053 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Scn11aQ9R053 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Scn11aQ9R053 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
Scn11aQ9R053 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Scn11aQ9R053 Gm3375-201ENSMUST00000203929 796 ntBASIC21.88■■□□□ 1.09
Scn11aQ9R053 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Scn11aQ9R053 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Scn11aQ9R053 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Scn11aQ9R053 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Scn11aQ9R053 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC21.87■■□□□ 1.09
Scn11aQ9R053 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Scn11aQ9R053 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
Scn11aQ9R053 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Scn11aQ9R053 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC21.87■■□□□ 1.09
Scn11aQ9R053 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Scn11aQ9R053 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Scn11aQ9R053 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC21.87■■□□□ 1.09
Scn11aQ9R053 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
Scn11aQ9R053 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Scn11aQ9R053 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Scn11aQ9R053 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Scn11aQ9R053 Gm8668-201ENSMUST00000120559 1447 ntBASIC21.86■■□□□ 1.09
Scn11aQ9R053 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Scn11aQ9R053 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC21.86■■□□□ 1.09
Scn11aQ9R053 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Scn11aQ9R053 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
Scn11aQ9R053 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
Scn11aQ9R053 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Scn11aQ9R053 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Scn11aQ9R053 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Scn11aQ9R053 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Scn11aQ9R053 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Scn11aQ9R053 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Scn11aQ9R053 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC21.85■■□□□ 1.09
Retrieved 100 of 76,532 protein–RNA pairs in 26.3 ms