Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC19.43■□□□□ 0.7
Sf3b1Q99NB9 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Sf3b1Q99NB9 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Sf3b1Q99NB9 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Sf3b1Q99NB9 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Sf3b1Q99NB9 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Sf3b1Q99NB9 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Sf3b1Q99NB9 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Sf3b1Q99NB9 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Sf3b1Q99NB9 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Sf3b1Q99NB9 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Sf3b1Q99NB9 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Sf3b1Q99NB9 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC19.42■□□□□ 0.7
Sf3b1Q99NB9 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC19.42■□□□□ 0.7
Sf3b1Q99NB9 H2-K2-201ENSMUST00000174250 1049 ntBASIC19.42■□□□□ 0.7
Sf3b1Q99NB9 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC19.42■□□□□ 0.7
Sf3b1Q99NB9 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Sf3b1Q99NB9 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Sf3b1Q99NB9 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Sf3b1Q99NB9 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Sf3b1Q99NB9 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Sf3b1Q99NB9 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Sf3b1Q99NB9 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
Sf3b1Q99NB9 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Sf3b1Q99NB9 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Sf3b1Q99NB9 Gm11927-201ENSMUST00000118472 759 ntBASIC19.41■□□□□ 0.7
Sf3b1Q99NB9 Gm22325-201ENSMUST00000158904 308 ntBASIC19.41■□□□□ 0.7
Sf3b1Q99NB9 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Sf3b1Q99NB9 Gm29241-201ENSMUST00000189260 1096 ntBASIC19.41■□□□□ 0.7
Sf3b1Q99NB9 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Sf3b1Q99NB9 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Sf3b1Q99NB9 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC19.41■□□□□ 0.7
Sf3b1Q99NB9 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Sf3b1Q99NB9 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Sf3b1Q99NB9 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC19.41■□□□□ 0.7
Sf3b1Q99NB9 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Sf3b1Q99NB9 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Sf3b1Q99NB9 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Sf3b1Q99NB9 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Sf3b1Q99NB9 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Sf3b1Q99NB9 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Sf3b1Q99NB9 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Sf3b1Q99NB9 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC19.4■□□□□ 0.7
Sf3b1Q99NB9 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC19.4■□□□□ 0.7
Sf3b1Q99NB9 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Sf3b1Q99NB9 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Sf3b1Q99NB9 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Sf3b1Q99NB9 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Sf3b1Q99NB9 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Sf3b1Q99NB9 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Sf3b1Q99NB9 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Sf3b1Q99NB9 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Sf3b1Q99NB9 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Sf3b1Q99NB9 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Sf3b1Q99NB9 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Sf3b1Q99NB9 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Sf3b1Q99NB9 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Sf3b1Q99NB9 AC153881.1-201ENSMUST00000214448 284 ntBASIC19.39■□□□□ 0.69
Sf3b1Q99NB9 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Sf3b1Q99NB9 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Sf3b1Q99NB9 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Sf3b1Q99NB9 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Sf3b1Q99NB9 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
Sf3b1Q99NB9 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC19.38■□□□□ 0.69
Sf3b1Q99NB9 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Sf3b1Q99NB9 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Sf3b1Q99NB9 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Sf3b1Q99NB9 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
Sf3b1Q99NB9 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC19.38■□□□□ 0.69
Sf3b1Q99NB9 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Sf3b1Q99NB9 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Sf3b1Q99NB9 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Sf3b1Q99NB9 BC021767-201ENSMUST00000126387 1716 ntBASIC19.37■□□□□ 0.69
Sf3b1Q99NB9 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Sf3b1Q99NB9 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Sf3b1Q99NB9 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Sf3b1Q99NB9 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Sf3b1Q99NB9 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
Sf3b1Q99NB9 Alkbh1-212ENSMUST00000185301 408 ntBASIC19.37■□□□□ 0.69
Sf3b1Q99NB9 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC19.37■□□□□ 0.69
Sf3b1Q99NB9 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Sf3b1Q99NB9 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Sf3b1Q99NB9 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Sf3b1Q99NB9 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Sf3b1Q99NB9 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Sf3b1Q99NB9 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Sf3b1Q99NB9 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
Sf3b1Q99NB9 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Sf3b1Q99NB9 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC19.36■□□□□ 0.69
Sf3b1Q99NB9 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC19.36■□□□□ 0.69
Sf3b1Q99NB9 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Sf3b1Q99NB9 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Sf3b1Q99NB9 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Sf3b1Q99NB9 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC19.36■□□□□ 0.69
Sf3b1Q99NB9 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Sf3b1Q99NB9 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Sf3b1Q99NB9 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Sf3b1Q99NB9 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Sf3b1Q99NB9 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Sf3b1Q99NB9 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms