Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Limch1Q3UH68 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Limch1Q3UH68 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Limch1Q3UH68 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
Limch1Q3UH68 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Limch1Q3UH68 Gm43213-201ENSMUST00000151866 1790 ntBASIC21.54■■□□□ 1.04
Limch1Q3UH68 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Limch1Q3UH68 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC21.54■■□□□ 1.04
Limch1Q3UH68 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
Limch1Q3UH68 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
Limch1Q3UH68 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC21.54■■□□□ 1.04
Limch1Q3UH68 Gm6420-201ENSMUST00000193885 723 ntBASIC21.54■■□□□ 1.04
Limch1Q3UH68 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC21.54■■□□□ 1.04
Limch1Q3UH68 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
Limch1Q3UH68 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
Limch1Q3UH68 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Limch1Q3UH68 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Limch1Q3UH68 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC21.54■■□□□ 1.04
Limch1Q3UH68 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
Limch1Q3UH68 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC21.53■■□□□ 1.04
Limch1Q3UH68 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Limch1Q3UH68 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Limch1Q3UH68 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Limch1Q3UH68 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Limch1Q3UH68 Gm42922-201ENSMUST00000195887 2078 ntBASIC21.53■■□□□ 1.04
Limch1Q3UH68 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Limch1Q3UH68 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC21.53■■□□□ 1.04
Limch1Q3UH68 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Limch1Q3UH68 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Limch1Q3UH68 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
Limch1Q3UH68 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Limch1Q3UH68 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC21.53■■□□□ 1.04
Limch1Q3UH68 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC21.53■■□□□ 1.04
Limch1Q3UH68 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Limch1Q3UH68 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Limch1Q3UH68 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Limch1Q3UH68 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC21.53■■□□□ 1.04
Limch1Q3UH68 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Limch1Q3UH68 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Limch1Q3UH68 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Limch1Q3UH68 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
Limch1Q3UH68 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
Limch1Q3UH68 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Limch1Q3UH68 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Limch1Q3UH68 Gm10655-201ENSMUST00000098658 1397 ntBASIC21.52■■□□□ 1.04
Limch1Q3UH68 Fam105a-203ENSMUST00000226170 3043 ntBASIC21.52■■□□□ 1.04
Limch1Q3UH68 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Limch1Q3UH68 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Limch1Q3UH68 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC21.52■■□□□ 1.04
Limch1Q3UH68 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC21.52■■□□□ 1.04
Limch1Q3UH68 Gm22240-201ENSMUST00000175225 82 ntBASIC21.52■■□□□ 1.04
Limch1Q3UH68 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
Limch1Q3UH68 Gm5408-201ENSMUST00000197998 747 ntBASIC21.52■■□□□ 1.04
Limch1Q3UH68 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Limch1Q3UH68 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Limch1Q3UH68 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Limch1Q3UH68 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Limch1Q3UH68 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
Limch1Q3UH68 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Limch1Q3UH68 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Limch1Q3UH68 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
Limch1Q3UH68 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC21.51■■□□□ 1.03
Limch1Q3UH68 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Limch1Q3UH68 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Limch1Q3UH68 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Limch1Q3UH68 Gm43859-201ENSMUST00000200075 1412 ntBASIC21.51■■□□□ 1.03
Limch1Q3UH68 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Limch1Q3UH68 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Limch1Q3UH68 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC21.51■■□□□ 1.03
Limch1Q3UH68 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Limch1Q3UH68 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Limch1Q3UH68 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Limch1Q3UH68 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
Limch1Q3UH68 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
Limch1Q3UH68 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Limch1Q3UH68 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Limch1Q3UH68 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
Limch1Q3UH68 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC21.5■■□□□ 1.03
Limch1Q3UH68 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Limch1Q3UH68 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Limch1Q3UH68 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Limch1Q3UH68 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Limch1Q3UH68 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Limch1Q3UH68 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC21.49■■□□□ 1.03
Limch1Q3UH68 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
Limch1Q3UH68 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC21.49■■□□□ 1.03
Limch1Q3UH68 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Limch1Q3UH68 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Limch1Q3UH68 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Limch1Q3UH68 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC21.48■■□□□ 1.03
Limch1Q3UH68 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC21.48■■□□□ 1.03
Limch1Q3UH68 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
Limch1Q3UH68 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Limch1Q3UH68 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Limch1Q3UH68 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Limch1Q3UH68 Gm5953-201ENSMUST00000220644 2616 ntBASIC21.48■■□□□ 1.03
Limch1Q3UH68 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Limch1Q3UH68 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Limch1Q3UH68 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC21.48■■□□□ 1.03
Limch1Q3UH68 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms