Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
Ddb1Q3U1J4 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
Ddb1Q3U1J4 Gm10654-201ENSMUST00000098653 1633 ntBASIC23.43■■□□□ 1.34
Ddb1Q3U1J4 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Ddb1Q3U1J4 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
Ddb1Q3U1J4 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Ddb1Q3U1J4 Gm43353-201ENSMUST00000199224 1295 ntBASIC23.42■■□□□ 1.34
Ddb1Q3U1J4 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Ddb1Q3U1J4 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC23.42■■□□□ 1.34
Ddb1Q3U1J4 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.42■■□□□ 1.34
Ddb1Q3U1J4 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC23.41■■□□□ 1.34
Ddb1Q3U1J4 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Ddb1Q3U1J4 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC23.41■■□□□ 1.34
Ddb1Q3U1J4 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Ddb1Q3U1J4 AC126028.2-201ENSMUST00000228100 1833 ntBASIC23.41■■□□□ 1.34
Ddb1Q3U1J4 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC23.41■■□□□ 1.34
Ddb1Q3U1J4 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC23.41■■□□□ 1.34
Ddb1Q3U1J4 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Ddb1Q3U1J4 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Ddb1Q3U1J4 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC23.41■■□□□ 1.34
Ddb1Q3U1J4 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC23.41■■□□□ 1.34
Ddb1Q3U1J4 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
Ddb1Q3U1J4 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC23.41■■□□□ 1.34
Ddb1Q3U1J4 Gm2274-201ENSMUST00000184539 609 ntBASIC23.41■■□□□ 1.34
Ddb1Q3U1J4 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Ddb1Q3U1J4 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
Ddb1Q3U1J4 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Ddb1Q3U1J4 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Ddb1Q3U1J4 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
Ddb1Q3U1J4 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC23.4■■□□□ 1.34
Ddb1Q3U1J4 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
Ddb1Q3U1J4 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
Ddb1Q3U1J4 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
Ddb1Q3U1J4 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC23.4■■□□□ 1.34
Ddb1Q3U1J4 Gm18101-201ENSMUST00000215769 548 ntBASIC23.4■■□□□ 1.34
Ddb1Q3U1J4 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Ddb1Q3U1J4 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Ddb1Q3U1J4 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC23.39■■□□□ 1.33
Ddb1Q3U1J4 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC23.39■■□□□ 1.33
Ddb1Q3U1J4 AC134329.2-201ENSMUST00000217897 428 ntBASIC23.39■■□□□ 1.33
Ddb1Q3U1J4 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC23.39■■□□□ 1.33
Ddb1Q3U1J4 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC23.39■■□□□ 1.33
Ddb1Q3U1J4 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Ddb1Q3U1J4 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC23.39■■□□□ 1.33
Ddb1Q3U1J4 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
Ddb1Q3U1J4 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Ddb1Q3U1J4 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
Ddb1Q3U1J4 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
Ddb1Q3U1J4 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Ddb1Q3U1J4 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC23.38■■□□□ 1.33
Ddb1Q3U1J4 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC23.38■■□□□ 1.33
Ddb1Q3U1J4 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Ddb1Q3U1J4 Gm22697-201ENSMUST00000175194 63 ntBASIC23.38■■□□□ 1.33
Ddb1Q3U1J4 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Ddb1Q3U1J4 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Ddb1Q3U1J4 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Ddb1Q3U1J4 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Ddb1Q3U1J4 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Ddb1Q3U1J4 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
Ddb1Q3U1J4 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Ddb1Q3U1J4 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC23.37■■□□□ 1.33
Ddb1Q3U1J4 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Ddb1Q3U1J4 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Ddb1Q3U1J4 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC23.37■■□□□ 1.33
Ddb1Q3U1J4 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Ddb1Q3U1J4 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Ddb1Q3U1J4 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
Ddb1Q3U1J4 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC23.37■■□□□ 1.33
Ddb1Q3U1J4 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Ddb1Q3U1J4 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Ddb1Q3U1J4 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
Ddb1Q3U1J4 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Ddb1Q3U1J4 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
Ddb1Q3U1J4 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC23.36■■□□□ 1.33
Ddb1Q3U1J4 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Ddb1Q3U1J4 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC23.36■■□□□ 1.33
Ddb1Q3U1J4 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
Ddb1Q3U1J4 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
Ddb1Q3U1J4 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Ddb1Q3U1J4 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
Ddb1Q3U1J4 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC23.36■■□□□ 1.33
Ddb1Q3U1J4 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Ddb1Q3U1J4 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Ddb1Q3U1J4 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Ddb1Q3U1J4 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Ddb1Q3U1J4 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Ddb1Q3U1J4 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Ddb1Q3U1J4 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Ddb1Q3U1J4 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Ddb1Q3U1J4 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
Ddb1Q3U1J4 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Ddb1Q3U1J4 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
Ddb1Q3U1J4 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC23.35■■□□□ 1.33
Ddb1Q3U1J4 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Ddb1Q3U1J4 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC23.35■■□□□ 1.33
Ddb1Q3U1J4 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC23.35■■□□□ 1.33
Ddb1Q3U1J4 AC154471.1-201ENSMUST00000224418 436 ntBASIC23.35■■□□□ 1.33
Ddb1Q3U1J4 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Ddb1Q3U1J4 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Ddb1Q3U1J4 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms