Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Chd3B1AR17 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Chd3B1AR17 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Chd3B1AR17 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC17.99■□□□□ 0.47
Chd3B1AR17 CT010444.2-201ENSMUST00000217877 1629 ntBASIC17.99■□□□□ 0.47
Chd3B1AR17 Mtag2-201ENSMUST00000058665 714 ntBASIC17.99■□□□□ 0.47
Chd3B1AR17 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Chd3B1AR17 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Chd3B1AR17 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Chd3B1AR17 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
Chd3B1AR17 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Chd3B1AR17 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Chd3B1AR17 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Chd3B1AR17 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Chd3B1AR17 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC17.99■□□□□ 0.47
Chd3B1AR17 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Chd3B1AR17 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Chd3B1AR17 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Chd3B1AR17 Nrn1-203ENSMUST00000223611 1443 ntBASIC17.98■□□□□ 0.47
Chd3B1AR17 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Chd3B1AR17 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Chd3B1AR17 Gm37805-201ENSMUST00000192612 1094 ntBASIC17.98■□□□□ 0.47
Chd3B1AR17 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC17.98■□□□□ 0.47
Chd3B1AR17 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Chd3B1AR17 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Chd3B1AR17 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Chd3B1AR17 Mir1199-201ENSMUST00000117015 119 ntBASIC17.97■□□□□ 0.47
Chd3B1AR17 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC17.97■□□□□ 0.47
Chd3B1AR17 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
Chd3B1AR17 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Chd3B1AR17 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Chd3B1AR17 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Chd3B1AR17 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Chd3B1AR17 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Chd3B1AR17 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Chd3B1AR17 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Chd3B1AR17 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Chd3B1AR17 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Chd3B1AR17 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Chd3B1AR17 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Chd3B1AR17 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
Chd3B1AR17 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Chd3B1AR17 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Chd3B1AR17 Gm15378-201ENSMUST00000121894 207 ntBASIC17.96■□□□□ 0.47
Chd3B1AR17 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Chd3B1AR17 H2-K2-201ENSMUST00000174250 1049 ntBASIC17.96■□□□□ 0.47
Chd3B1AR17 Gm9484-201ENSMUST00000195892 1159 ntBASIC17.96■□□□□ 0.47
Chd3B1AR17 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC17.96■□□□□ 0.47
Chd3B1AR17 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC17.96■□□□□ 0.47
Chd3B1AR17 Gm18025-201ENSMUST00000221733 862 ntBASIC17.96■□□□□ 0.47
Chd3B1AR17 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Chd3B1AR17 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Chd3B1AR17 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
Chd3B1AR17 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Chd3B1AR17 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Chd3B1AR17 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Chd3B1AR17 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Chd3B1AR17 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Chd3B1AR17 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Chd3B1AR17 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Chd3B1AR17 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
Chd3B1AR17 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.46
Chd3B1AR17 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Chd3B1AR17 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC17.95■□□□□ 0.46
Chd3B1AR17 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Chd3B1AR17 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Chd3B1AR17 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Chd3B1AR17 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Chd3B1AR17 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Chd3B1AR17 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
Chd3B1AR17 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Chd3B1AR17 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
Chd3B1AR17 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Chd3B1AR17 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Chd3B1AR17 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Chd3B1AR17 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Chd3B1AR17 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
Chd3B1AR17 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Chd3B1AR17 BC021767-201ENSMUST00000126387 1716 ntBASIC17.94■□□□□ 0.46
Chd3B1AR17 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Chd3B1AR17 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Chd3B1AR17 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Chd3B1AR17 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Chd3B1AR17 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC17.94■□□□□ 0.46
Chd3B1AR17 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Chd3B1AR17 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Chd3B1AR17 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Chd3B1AR17 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Chd3B1AR17 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Chd3B1AR17 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
Chd3B1AR17 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Chd3B1AR17 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Chd3B1AR17 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC17.93■□□□□ 0.46
Chd3B1AR17 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC17.93■□□□□ 0.46
Chd3B1AR17 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
Chd3B1AR17 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC17.93■□□□□ 0.46
Chd3B1AR17 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Chd3B1AR17 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Chd3B1AR17 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Chd3B1AR17 Gm42922-201ENSMUST00000195887 2078 ntBASIC17.93■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 14.5 ms