Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Ccdc7a-202ENSMUST00000108747 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Cux1P53564 Traj18-201ENSMUST00000103723 66 ntAPPRIS P1 BASIC10.87□□□□□ -0.67
Cux1P53564 Gm3476-201ENSMUST00000112742 853 ntAPPRIS ALT2 TSL 5 BASIC10.87□□□□□ -0.67
Cux1P53564 Rpl21-ps9-201ENSMUST00000119897 482 ntBASIC10.87□□□□□ -0.67
Cux1P53564 Gm16248-201ENSMUST00000124238 243 ntBASIC10.87□□□□□ -0.67
Cux1P53564 Gm22262-201ENSMUST00000158713 86 ntBASIC10.87□□□□□ -0.67
Cux1P53564 Gm29470-201ENSMUST00000188007 696 ntBASIC10.87□□□□□ -0.67
Cux1P53564 Gm28996-201ENSMUST00000190316 721 ntBASIC10.87□□□□□ -0.67
Cux1P53564 Gm29282-201ENSMUST00000190720 473 ntTSL 5 BASIC10.87□□□□□ -0.67
Cux1P53564 Gm44386-201ENSMUST00000204288 429 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Cux1P53564 Olfr181-203ENSMUST00000205742 1104 ntAPPRIS P1 BASIC10.87□□□□□ -0.67
Cux1P53564 Gm44787-202ENSMUST00000208339 1069 ntTSL 5 BASIC10.87□□□□□ -0.67
Cux1P53564 AC163621.3-201ENSMUST00000221738 1033 ntTSL 5 BASIC10.87□□□□□ -0.67
Cux1P53564 Gm19340-201ENSMUST00000221995 345 ntBASIC10.87□□□□□ -0.67
Cux1P53564 Gm9226-201ENSMUST00000188352 3489 ntBASIC10.87□□□□□ -0.67
Cux1P53564 Gm21152-201ENSMUST00000190271 3483 ntBASIC10.87□□□□□ -0.67
Cux1P53564 Clec1a-202ENSMUST00000203162 5128 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Cux1P53564 Fam60a-211ENSMUST00000204435 2785 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
Cux1P53564 Ccdc141-207ENSMUST00000164114 6222 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
Cux1P53564 Ncor2-201ENSMUST00000055256 7780 ntAPPRIS ALT2 TSL 2 BASIC10.87□□□□□ -0.67
Cux1P53564 Gm42771-201ENSMUST00000198342 2486 ntBASIC10.87□□□□□ -0.67
Cux1P53564 Vmn1r52-203ENSMUST00000227100 2307 ntBASIC10.87□□□□□ -0.67
Cux1P53564 Gm44950-201ENSMUST00000206403 2296 ntBASIC10.87□□□□□ -0.67
Cux1P53564 Mcf2l-205ENSMUST00000110871 3401 ntTSL 5 BASIC10.87□□□□□ -0.67
Cux1P53564 Gtf3c2-210ENSMUST00000202639 4200 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
Cux1P53564 Fam168a-205ENSMUST00000207875 4077 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cux1P53564 Rora-201ENSMUST00000034766 10878 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Cux1P53564 Gm2065-201ENSMUST00000194697 2757 ntBASIC10.86□□□□□ -0.67
Cux1P53564 Gm43411-201ENSMUST00000196235 1579 ntBASIC10.86□□□□□ -0.67
Cux1P53564 Slc2a9-203ENSMUST00000067886 3602 ntAPPRIS P4 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cux1P53564 Pi4ka-211ENSMUST00000154364 6630 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cux1P53564 Zfp473-202ENSMUST00000118162 3091 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cux1P53564 Gm23903-201ENSMUST00000157566 131 ntBASIC10.86□□□□□ -0.67
Cux1P53564 Tnfsf10-202ENSMUST00000174840 989 ntTSL 5 BASIC10.86□□□□□ -0.67
Cux1P53564 Gm4956-202ENSMUST00000178869 672 ntBASIC10.86□□□□□ -0.67
Cux1P53564 n-R5s209-201ENSMUST00000179494 119 ntBASIC10.86□□□□□ -0.67
Cux1P53564 Scgb2b19-201ENSMUST00000179688 520 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cux1P53564 Gm43555-201ENSMUST00000196588 310 ntBASIC10.86□□□□□ -0.67
Cux1P53564 Zfp78-203ENSMUST00000207314 4675 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cux1P53564 AC131654.1-201ENSMUST00000219675 745 ntBASIC10.86□□□□□ -0.67
Cux1P53564 Wee2-201ENSMUST00000038907 2884 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cux1P53564 Slc1a2-202ENSMUST00000080210 11595 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cux1P53564 Ick-202ENSMUST00000044551 6560 ntAPPRIS P2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cux1P53564 Svep1-201ENSMUST00000042850 11629 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cux1P53564 Hcfc1-201ENSMUST00000033761 8138 ntAPPRIS P2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cux1P53564 Gm28440-201ENSMUST00000186328 1499 ntTSL 5 BASIC10.86□□□□□ -0.67
Cux1P53564 Eif2ak4-206ENSMUST00000110874 5298 ntTSL 5 BASIC10.85□□□□□ -0.67
Cux1P53564 Gm19210-201ENSMUST00000199562 1350 ntBASIC10.85□□□□□ -0.67
Cux1P53564 Scml2-205ENSMUST00000101113 2931 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
Cux1P53564 Zhx3-202ENSMUST00000103112 9109 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cux1P53564 Cfap69-210ENSMUST00000196165 4408 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cux1P53564 Gm26967-201ENSMUST00000182878 2303 ntBASIC10.85□□□□□ -0.67
Cux1P53564 Klra5-202ENSMUST00000118060 1279 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
Cux1P53564 Tex35-203ENSMUST00000119526 679 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
Cux1P53564 Gm12088-201ENSMUST00000137364 520 ntTSL 2 BASIC10.85□□□□□ -0.67
Cux1P53564 1700129C05Rik-202ENSMUST00000159858 784 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
Cux1P53564 Gm16133-202ENSMUST00000160278 565 ntTSL 3 BASIC10.85□□□□□ -0.67
Cux1P53564 Gm17118-201ENSMUST00000164032 335 ntTSL 5 BASIC10.85□□□□□ -0.67
Cux1P53564 Gm2916-201ENSMUST00000178392 384 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
Cux1P53564 Gm10410-201ENSMUST00000180138 384 ntBASIC10.85□□□□□ -0.67
Cux1P53564 Gm26898-201ENSMUST00000181678 384 ntBASIC10.85□□□□□ -0.67
Cux1P53564 Gm5345-201ENSMUST00000183076 1014 ntBASIC10.85□□□□□ -0.67
Cux1P53564 Gm29385-201ENSMUST00000186831 363 ntBASIC10.85□□□□□ -0.67
Cux1P53564 Gm39463-201ENSMUST00000214575 735 ntTSL 3 BASIC10.85□□□□□ -0.67
Cux1P53564 Gm4556-201ENSMUST00000217808 355 ntBASIC10.85□□□□□ -0.67
Cux1P53564 AC153821.2-201ENSMUST00000220253 468 ntTSL 5 BASIC10.85□□□□□ -0.67
Cux1P53564 CT009728.1-201ENSMUST00000225228 1050 ntBASIC10.85□□□□□ -0.67
Cux1P53564 AC105324.1-201ENSMUST00000227844 386 ntBASIC10.85□□□□□ -0.67
Cux1P53564 Rbms3-207ENSMUST00000164018 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cux1P53564 Snrnp200-201ENSMUST00000103220 6745 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cux1P53564 BC051142-203ENSMUST00000114175 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cux1P53564 Slco6b1-201ENSMUST00000167383 2492 ntTSL 2 BASIC10.85□□□□□ -0.67
Cux1P53564 Gm9049-201ENSMUST00000178998 2409 ntAPPRIS P1 BASIC10.85□□□□□ -0.67
Cux1P53564 Gm9030-201ENSMUST00000218405 2410 ntBASIC10.85□□□□□ -0.67
Cux1P53564 Gm32717-201ENSMUST00000219147 2409 ntAPPRIS P1 BASIC10.85□□□□□ -0.67
Cux1P53564 Gm9029-201ENSMUST00000219232 2410 ntBASIC10.85□□□□□ -0.67
Cux1P53564 Gm32802-201ENSMUST00000219565 2409 ntAPPRIS P1 BASIC10.85□□□□□ -0.67
Cux1P53564 Gm9045-201ENSMUST00000219760 2409 ntAPPRIS P1 BASIC10.85□□□□□ -0.67
Cux1P53564 Gm37706-201ENSMUST00000195379 2765 ntBASIC10.85□□□□□ -0.67
Cux1P53564 A4gnt-201ENSMUST00000042553 2757 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cux1P53564 Gm805-201ENSMUST00000181667 3160 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Cux1P53564 Tnfrsf19-201ENSMUST00000111234 4051 ntAPPRIS P2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cux1P53564 Gm8177-201ENSMUST00000181591 1336 ntBASIC10.84□□□□□ -0.67
Cux1P53564 Gm43221-201ENSMUST00000197612 2071 ntBASIC10.84□□□□□ -0.67
Cux1P53564 Dlgap2-201ENSMUST00000043279 3580 ntAPPRIS ALT2 TSL 5 BASIC10.84□□□□□ -0.67
Cux1P53564 Myt1-201ENSMUST00000081125 5327 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Cux1P53564 Gm11462-201ENSMUST00000117749 562 ntBASIC10.84□□□□□ -0.67
Cux1P53564 4930480G23Rik-201ENSMUST00000125909 1013 ntTSL 5 BASIC10.84□□□□□ -0.67
Cux1P53564 Gm3140-201ENSMUST00000163523 481 ntBASIC10.84□□□□□ -0.67
Cux1P53564 Gm2229-201ENSMUST00000193328 710 ntBASIC10.84□□□□□ -0.67
Cux1P53564 Gm412-201ENSMUST00000193360 948 ntBASIC10.84□□□□□ -0.67
Cux1P53564 Gm7441-201ENSMUST00000220697 1074 ntBASIC10.84□□□□□ -0.67
Cux1P53564 AC131187.2-201ENSMUST00000223936 994 ntBASIC10.84□□□□□ -0.67
Cux1P53564 Aspm-201ENSMUST00000053364 9867 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Cux1P53564 Gatad2b-205ENSMUST00000199754 7438 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
Cux1P53564 Ctnnd1-211ENSMUST00000111685 5985 ntTSL 5 BASIC10.84□□□□□ -0.67
Cux1P53564 Ctnnd1-215ENSMUST00000111689 5961 ntTSL 5 BASIC10.84□□□□□ -0.67
Cux1P53564 Musk-201ENSMUST00000081919 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Cux1P53564 Gm43970-201ENSMUST00000204346 3605 ntBASIC10.84□□□□□ -0.67
Cux1P53564 Gm43621-201ENSMUST00000202733 2022 ntBASIC10.84□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 61.6 ms