Protein–RNA interactions for Protein: Q8VEE4

Rpa1, Replication protein A 70 kDa DNA-binding subunit, mousemouse

Known RBP Predictions only

Length 623 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpa1Q8VEE4 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Rpa1Q8VEE4 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Rpa1Q8VEE4 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Rpa1Q8VEE4 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Rpa1Q8VEE4 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC18.49■□□□□ 0.55
Rpa1Q8VEE4 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Rpa1Q8VEE4 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Rpa1Q8VEE4 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Rpa1Q8VEE4 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Rpa1Q8VEE4 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Rpa1Q8VEE4 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC18.48■□□□□ 0.55
Rpa1Q8VEE4 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC18.48■□□□□ 0.55
Rpa1Q8VEE4 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
Rpa1Q8VEE4 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Rpa1Q8VEE4 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Rpa1Q8VEE4 Gm6598-201ENSMUST00000202719 2615 ntBASIC18.48■□□□□ 0.55
Rpa1Q8VEE4 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC18.48■□□□□ 0.55
Rpa1Q8VEE4 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Rpa1Q8VEE4 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Rpa1Q8VEE4 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Rpa1Q8VEE4 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Rpa1Q8VEE4 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Rpa1Q8VEE4 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Rpa1Q8VEE4 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Rpa1Q8VEE4 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Rpa1Q8VEE4 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Rpa1Q8VEE4 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC18.47■□□□□ 0.55
Rpa1Q8VEE4 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Rpa1Q8VEE4 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
Rpa1Q8VEE4 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Rpa1Q8VEE4 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Rpa1Q8VEE4 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Rpa1Q8VEE4 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Rpa1Q8VEE4 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC18.47■□□□□ 0.55
Rpa1Q8VEE4 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Rpa1Q8VEE4 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Rpa1Q8VEE4 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Rpa1Q8VEE4 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Rpa1Q8VEE4 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Rpa1Q8VEE4 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Rpa1Q8VEE4 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Rpa1Q8VEE4 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC18.46■□□□□ 0.55
Rpa1Q8VEE4 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Rpa1Q8VEE4 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC18.46■□□□□ 0.55
Rpa1Q8VEE4 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC18.46■□□□□ 0.55
Rpa1Q8VEE4 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC18.46■□□□□ 0.55
Rpa1Q8VEE4 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Rpa1Q8VEE4 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC18.46■□□□□ 0.55
Rpa1Q8VEE4 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Rpa1Q8VEE4 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Rpa1Q8VEE4 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Rpa1Q8VEE4 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.54
Rpa1Q8VEE4 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
Rpa1Q8VEE4 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Rpa1Q8VEE4 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Rpa1Q8VEE4 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Rpa1Q8VEE4 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
Rpa1Q8VEE4 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Rpa1Q8VEE4 Gm45244-201ENSMUST00000211328 2200 ntBASIC18.45■□□□□ 0.54
Rpa1Q8VEE4 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Rpa1Q8VEE4 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Rpa1Q8VEE4 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Rpa1Q8VEE4 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC18.45■□□□□ 0.54
Rpa1Q8VEE4 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Rpa1Q8VEE4 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Rpa1Q8VEE4 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Rpa1Q8VEE4 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Rpa1Q8VEE4 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
Rpa1Q8VEE4 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Rpa1Q8VEE4 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Rpa1Q8VEE4 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Rpa1Q8VEE4 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
Rpa1Q8VEE4 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Rpa1Q8VEE4 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC18.44■□□□□ 0.54
Rpa1Q8VEE4 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Rpa1Q8VEE4 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Rpa1Q8VEE4 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Rpa1Q8VEE4 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Rpa1Q8VEE4 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Rpa1Q8VEE4 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Rpa1Q8VEE4 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Rpa1Q8VEE4 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Rpa1Q8VEE4 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Rpa1Q8VEE4 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Rpa1Q8VEE4 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Rpa1Q8VEE4 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Rpa1Q8VEE4 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Rpa1Q8VEE4 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Rpa1Q8VEE4 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
Rpa1Q8VEE4 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC18.43■□□□□ 0.54
Rpa1Q8VEE4 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
Rpa1Q8VEE4 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Rpa1Q8VEE4 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Rpa1Q8VEE4 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Rpa1Q8VEE4 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Rpa1Q8VEE4 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Rpa1Q8VEE4 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC18.43■□□□□ 0.54
Rpa1Q8VEE4 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
Rpa1Q8VEE4 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Rpa1Q8VEE4 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 14.2 ms