Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Col7a1Q63870 Gm38027-201ENSMUST00000192315 235 ntBASIC15.44■□□□□ 0.06
Col7a1Q63870 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC15.44■□□□□ 0.06
Col7a1Q63870 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC15.44■□□□□ 0.06
Col7a1Q63870 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Col7a1Q63870 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
Col7a1Q63870 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Col7a1Q63870 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Col7a1Q63870 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Col7a1Q63870 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
Col7a1Q63870 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Col7a1Q63870 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Col7a1Q63870 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Col7a1Q63870 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC15.44■□□□□ 0.06
Col7a1Q63870 AC166341.7-201ENSMUST00000221698 126 ntBASIC15.44■□□□□ 0.06
Col7a1Q63870 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC15.43■□□□□ 0.06
Col7a1Q63870 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col7a1Q63870 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC15.43■□□□□ 0.06
Col7a1Q63870 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Col7a1Q63870 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col7a1Q63870 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
Col7a1Q63870 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Col7a1Q63870 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col7a1Q63870 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
Col7a1Q63870 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC15.43■□□□□ 0.06
Col7a1Q63870 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC15.43■□□□□ 0.06
Col7a1Q63870 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col7a1Q63870 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col7a1Q63870 Snhg20-203ENSMUST00000182811 2153 ntBASIC15.43■□□□□ 0.06
Col7a1Q63870 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col7a1Q63870 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col7a1Q63870 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col7a1Q63870 Mir3081-201ENSMUST00000175305 84 ntBASIC15.42■□□□□ 0.06
Col7a1Q63870 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC15.42■□□□□ 0.06
Col7a1Q63870 Gm5864-201ENSMUST00000202263 970 ntBASIC15.42■□□□□ 0.06
Col7a1Q63870 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Col7a1Q63870 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col7a1Q63870 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col7a1Q63870 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
Col7a1Q63870 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col7a1Q63870 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col7a1Q63870 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
Col7a1Q63870 Gm28659-201ENSMUST00000188013 759 ntBASIC15.42■□□□□ 0.06
Col7a1Q63870 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col7a1Q63870 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC15.42■□□□□ 0.06
Col7a1Q63870 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
Col7a1Q63870 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col7a1Q63870 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col7a1Q63870 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
Col7a1Q63870 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
Col7a1Q63870 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Col7a1Q63870 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col7a1Q63870 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Col7a1Q63870 Gm21559-201ENSMUST00000220638 855 ntBASIC15.41■□□□□ 0.06
Col7a1Q63870 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col7a1Q63870 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col7a1Q63870 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col7a1Q63870 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC15.41■□□□□ 0.06
Col7a1Q63870 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Col7a1Q63870 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Col7a1Q63870 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Col7a1Q63870 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col7a1Q63870 Gm27742-201ENSMUST00000184667 60 ntBASIC15.4■□□□□ 0.06
Col7a1Q63870 Gm38285-201ENSMUST00000192928 922 ntBASIC15.4■□□□□ 0.06
Col7a1Q63870 Gm17808-201ENSMUST00000200859 894 ntBASIC15.4■□□□□ 0.06
Col7a1Q63870 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col7a1Q63870 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Col7a1Q63870 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
Col7a1Q63870 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Col7a1Q63870 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col7a1Q63870 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col7a1Q63870 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
Col7a1Q63870 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col7a1Q63870 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col7a1Q63870 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col7a1Q63870 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col7a1Q63870 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col7a1Q63870 Gm10654-201ENSMUST00000098653 1633 ntBASIC15.39■□□□□ 0.05
Col7a1Q63870 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Col7a1Q63870 Gm18206-201ENSMUST00000207027 926 ntBASIC15.39■□□□□ 0.05
Col7a1Q63870 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col7a1Q63870 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col7a1Q63870 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Col7a1Q63870 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col7a1Q63870 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Col7a1Q63870 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Col7a1Q63870 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Col7a1Q63870 Gm16061-201ENSMUST00000122167 857 ntBASIC15.39■□□□□ 0.05
Col7a1Q63870 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC15.39■□□□□ 0.05
Col7a1Q63870 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Col7a1Q63870 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC15.39■□□□□ 0.05
Col7a1Q63870 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC15.39■□□□□ 0.05
Col7a1Q63870 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Col7a1Q63870 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC15.39■□□□□ 0.05
Col7a1Q63870 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col7a1Q63870 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
Col7a1Q63870 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col7a1Q63870 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
Col7a1Q63870 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col7a1Q63870 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 18.9 ms