Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Hmgb1P63158 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC20.23■□□□□ 0.83
Hmgb1P63158 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC20.23■□□□□ 0.83
Hmgb1P63158 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Hmgb1P63158 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Hmgb1P63158 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Hmgb1P63158 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC20.23■□□□□ 0.83
Hmgb1P63158 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Hmgb1P63158 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Hmgb1P63158 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC20.22■□□□□ 0.83
Hmgb1P63158 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Hmgb1P63158 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Hmgb1P63158 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Hmgb1P63158 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Hmgb1P63158 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Hmgb1P63158 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC20.22■□□□□ 0.83
Hmgb1P63158 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Hmgb1P63158 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
Hmgb1P63158 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Hmgb1P63158 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Hmgb1P63158 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC20.22■□□□□ 0.83
Hmgb1P63158 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Hmgb1P63158 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC20.22■□□□□ 0.83
Hmgb1P63158 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Hmgb1P63158 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC20.21■□□□□ 0.83
Hmgb1P63158 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Hmgb1P63158 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Hmgb1P63158 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Hmgb1P63158 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
Hmgb1P63158 Gm13534-201ENSMUST00000121169 513 ntBASIC20.21■□□□□ 0.83
Hmgb1P63158 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Hmgb1P63158 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Hmgb1P63158 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Hmgb1P63158 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Hmgb1P63158 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Hmgb1P63158 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Hmgb1P63158 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Hmgb1P63158 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.83
Hmgb1P63158 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
Hmgb1P63158 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Hmgb1P63158 Gm9194-201ENSMUST00000220749 1447 ntBASIC20.2■□□□□ 0.82
Hmgb1P63158 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Hmgb1P63158 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Hmgb1P63158 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC20.2■□□□□ 0.82
Hmgb1P63158 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Hmgb1P63158 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Hmgb1P63158 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Hmgb1P63158 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC20.19■□□□□ 0.82
Hmgb1P63158 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC20.19■□□□□ 0.82
Hmgb1P63158 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Hmgb1P63158 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Hmgb1P63158 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Hmgb1P63158 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC20.19■□□□□ 0.82
Hmgb1P63158 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC20.19■□□□□ 0.82
Hmgb1P63158 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Hmgb1P63158 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Hmgb1P63158 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Hmgb1P63158 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Hmgb1P63158 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Hmgb1P63158 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC20.18■□□□□ 0.82
Hmgb1P63158 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Hmgb1P63158 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Hmgb1P63158 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Hmgb1P63158 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC20.18■□□□□ 0.82
Hmgb1P63158 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Hmgb1P63158 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Hmgb1P63158 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Hmgb1P63158 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Hmgb1P63158 Gm13234-201ENSMUST00000120010 747 ntBASIC20.17■□□□□ 0.82
Hmgb1P63158 Gm37805-201ENSMUST00000192612 1094 ntBASIC20.17■□□□□ 0.82
Hmgb1P63158 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC20.17■□□□□ 0.82
Hmgb1P63158 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Hmgb1P63158 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Hmgb1P63158 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Hmgb1P63158 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Hmgb1P63158 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Hmgb1P63158 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Hmgb1P63158 Gm8309-201ENSMUST00000206627 1448 ntBASIC20.17■□□□□ 0.82
Hmgb1P63158 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Hmgb1P63158 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Hmgb1P63158 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Hmgb1P63158 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Hmgb1P63158 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Hmgb1P63158 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Hmgb1P63158 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Hmgb1P63158 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC20.16■□□□□ 0.82
Hmgb1P63158 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Hmgb1P63158 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Hmgb1P63158 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Hmgb1P63158 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Hmgb1P63158 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC20.16■□□□□ 0.82
Hmgb1P63158 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
Hmgb1P63158 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
Hmgb1P63158 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Hmgb1P63158 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Hmgb1P63158 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Hmgb1P63158 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC20.16■□□□□ 0.82
Hmgb1P63158 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Hmgb1P63158 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Hmgb1P63158 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 18.1 ms