Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Klrc3-202ENSMUST00000170148 712 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.65
Cux1P53564 Gm20530-201ENSMUST00000174261 254 ntBASIC10.96□□□□□ -0.65
Cux1P53564 n-R5s109-201ENSMUST00000179195 119 ntBASIC10.96□□□□□ -0.65
Cux1P53564 Gm21301-201ENSMUST00000189476 699 ntBASIC10.96□□□□□ -0.65
Cux1P53564 Gm37065-201ENSMUST00000191636 444 ntTSL 2 BASIC10.96□□□□□ -0.65
Cux1P53564 9430087J23Rik-201ENSMUST00000195414 1152 ntBASIC10.96□□□□□ -0.65
Cux1P53564 Mark1-ps1-201ENSMUST00000198516 717 ntBASIC10.96□□□□□ -0.65
Cux1P53564 Lncbate1-201ENSMUST00000211953 812 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Cux1P53564 Gm18040-201ENSMUST00000217922 827 ntBASIC10.96□□□□□ -0.65
Cux1P53564 AC155929.4-201ENSMUST00000218493 491 ntTSL 3 BASIC10.96□□□□□ -0.65
Cux1P53564 Vmn1r73-201ENSMUST00000055070 912 ntAPPRIS P1 BASIC10.96□□□□□ -0.65
Cux1P53564 Olfr930-201ENSMUST00000058789 1101 ntAPPRIS P1 BASIC10.96□□□□□ -0.65
Cux1P53564 Tceal8-204ENSMUST00000163584 2358 ntAPPRIS P1 TSL 3 BASIC10.96□□□□□ -0.65
Cux1P53564 Meis2-205ENSMUST00000110907 3718 ntAPPRIS ALT1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Cux1P53564 CR974429.2-201ENSMUST00000221883 1696 ntBASIC10.96□□□□□ -0.66
Cux1P53564 Rasef-202ENSMUST00000102837 5158 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
Cux1P53564 Olfr342-202ENSMUST00000216275 3818 ntAPPRIS P1 TSL 5 BASIC10.96□□□□□ -0.66
Cux1P53564 Deptor-201ENSMUST00000023056 3300 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.66
Cux1P53564 Olfr559-202ENSMUST00000215657 1560 ntAPPRIS P1 TSL 5 BASIC10.96□□□□□ -0.66
Cux1P53564 Ttll7-201ENSMUST00000037942 7394 ntAPPRIS P2 TSL 5 BASIC10.96□□□□□ -0.66
Cux1P53564 CT009604.1-201ENSMUST00000223900 1328 ntBASIC10.96□□□□□ -0.66
Cux1P53564 Slc5a6-201ENSMUST00000080431 3218 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Cux1P53564 Thg1l-202ENSMUST00000109254 2202 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
Cux1P53564 Ctnnd1-212ENSMUST00000111686 6061 ntTSL 5 BASIC10.96□□□□□ -0.66
Cux1P53564 Olfr77-202ENSMUST00000217347 5980 ntAPPRIS P1 TSL 5 BASIC10.96□□□□□ -0.66
Cux1P53564 Tlr1-202ENSMUST00000197315 3025 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Cux1P53564 Dennd2c-204ENSMUST00000173206 4879 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.66
Cux1P53564 Olfr1157-201ENSMUST00000099841 4621 ntAPPRIS P1 TSL 2 BASIC10.95□□□□□ -0.66
Cux1P53564 Gm44763-201ENSMUST00000208287 2019 ntBASIC10.95□□□□□ -0.66
Cux1P53564 Gria3-201ENSMUST00000076349 5192 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cux1P53564 Vip-201ENSMUST00000019906 1530 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cux1P53564 Lrrc51-208ENSMUST00000106968 766 ntAPPRIS P1 TSL 2 BASIC10.95□□□□□ -0.66
Cux1P53564 Gm20432-201ENSMUST00000173716 250 ntBASIC10.95□□□□□ -0.66
Cux1P53564 Gm42580-201ENSMUST00000197223 753 ntBASIC10.95□□□□□ -0.66
Cux1P53564 Gm2926-201ENSMUST00000205625 239 ntBASIC10.95□□□□□ -0.66
Cux1P53564 Gm32983-201ENSMUST00000208500 505 ntBASIC10.95□□□□□ -0.66
Cux1P53564 CT009742.1-201ENSMUST00000222507 702 ntBASIC10.95□□□□□ -0.66
Cux1P53564 Gm6575-201ENSMUST00000222946 697 ntBASIC10.95□□□□□ -0.66
Cux1P53564 Sfrp4-204ENSMUST00000222992 1062 ntTSL 5 BASIC10.95□□□□□ -0.66
Cux1P53564 Cetn1-201ENSMUST00000062769 1247 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cux1P53564 Olfr177-201ENSMUST00000072853 930 ntAPPRIS P1 BASIC10.95□□□□□ -0.66
Cux1P53564 Gm44101-201ENSMUST00000203951 2221 ntBASIC10.95□□□□□ -0.66
Cux1P53564 Gm38273-201ENSMUST00000194987 2382 ntBASIC10.95□□□□□ -0.66
Cux1P53564 Gm42864-201ENSMUST00000198371 1436 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Cux1P53564 Gm17841-201ENSMUST00000210711 2425 ntBASIC10.95□□□□□ -0.66
Cux1P53564 AC165260.6-206ENSMUST00000223884 3698 ntBASIC10.95□□□□□ -0.66
Cux1P53564 1810046K07Rik-201ENSMUST00000039959 1318 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cux1P53564 Mpzl3-203ENSMUST00000114664 3424 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cux1P53564 Fam168a-202ENSMUST00000107042 6388 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Cux1P53564 Elmo2-205ENSMUST00000103091 4695 ntAPPRIS P2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cux1P53564 Mtrr-201ENSMUST00000045827 3692 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cux1P53564 Lpar2-201ENSMUST00000034325 5701 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cux1P53564 Mir680-1-201ENSMUST00000102257 109 ntBASIC10.94□□□□□ -0.66
Cux1P53564 1700054M17Rik-201ENSMUST00000125654 445 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Cux1P53564 3100003L05Rik-201ENSMUST00000130240 664 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Cux1P53564 C230035I16Rik-202ENSMUST00000153753 643 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Cux1P53564 Gm22990-201ENSMUST00000175427 89 ntBASIC10.94□□□□□ -0.66
Cux1P53564 Gm44097-201ENSMUST00000204112 563 ntTSL 3 BASIC10.94□□□□□ -0.66
Cux1P53564 Ccdc47-201ENSMUST00000002043 5193 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cux1P53564 Scaper-204ENSMUST00000216595 2911 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Cux1P53564 AC150661.1-201ENSMUST00000222563 495 ntBASIC10.94□□□□□ -0.66
Cux1P53564 Pramel4-202ENSMUST00000091676 2399 ntAPPRIS P2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cux1P53564 Kantr-207ENSMUST00000195280 4212 ntAPPRIS P1 TSL 2 BASIC10.94□□□□□ -0.66
Cux1P53564 Cysltr2-201ENSMUST00000044664 1760 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cux1P53564 Gin1-201ENSMUST00000027571 2494 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Cux1P53564 AC162301.1-201ENSMUST00000228785 1542 ntBASIC10.94□□□□□ -0.66
Cux1P53564 Zkscan5-202ENSMUST00000085671 3794 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cux1P53564 Rorb-203ENSMUST00000112832 9293 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cux1P53564 Alpk1-201ENSMUST00000029662 4795 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
Cux1P53564 Pappa2-202ENSMUST00000159861 9518 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
Cux1P53564 Ccdc158-201ENSMUST00000060930 3676 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cux1P53564 Gm43422-201ENSMUST00000199780 3571 ntBASIC10.94□□□□□ -0.66
Cux1P53564 Pcmtd2-202ENSMUST00000108754 3499 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cux1P53564 Zfp661-203ENSMUST00000110368 2981 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cux1P53564 Gm22953-201ENSMUST00000116724 101 ntBASIC10.94□□□□□ -0.66
Cux1P53564 Prkd3-203ENSMUST00000118991 1265 ntTSL 2 BASIC10.94□□□□□ -0.66
Cux1P53564 Gm27295-201ENSMUST00000184264 153 ntBASIC10.94□□□□□ -0.66
Cux1P53564 1700104B16Rik-202ENSMUST00000187948 722 ntTSL 2 BASIC10.94□□□□□ -0.66
Cux1P53564 Serpina3a-201ENSMUST00000021496 1269 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
Cux1P53564 AC107663.1-201ENSMUST00000224257 468 ntBASIC10.94□□□□□ -0.66
Cux1P53564 Dpm2-201ENSMUST00000028151 869 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cux1P53564 Orm1-201ENSMUST00000030044 775 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cux1P53564 Gm9800-201ENSMUST00000052615 336 ntBASIC10.94□□□□□ -0.66
Cux1P53564 Orm2-201ENSMUST00000075341 775 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cux1P53564 Gm22865-201ENSMUST00000083949 214 ntBASIC10.94□□□□□ -0.66
Cux1P53564 Pnisr-201ENSMUST00000029911 4545 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Cux1P53564 Cacna1e-207ENSMUST00000211821 6765 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
Cux1P53564 Magea10-201ENSMUST00000088481 1821 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cux1P53564 Teddm1b-201ENSMUST00000055314 2527 ntAPPRIS P1 BASIC10.93□□□□□ -0.66
Cux1P53564 Fmn1-203ENSMUST00000102547 4967 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cux1P53564 AC130219.1-201ENSMUST00000228406 3433 ntBASIC10.93□□□□□ -0.66
Cux1P53564 Hipk2-205ENSMUST00000160962 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cux1P53564 Tmed5-201ENSMUST00000002837 3800 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cux1P53564 Phc3-204ENSMUST00000108255 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cux1P53564 Med12-202ENSMUST00000087956 6746 ntAPPRIS ALT2 TSL 5 BASIC10.93□□□□□ -0.66
Cux1P53564 5031434C07Rik-202ENSMUST00000188014 3244 ntBASIC10.93□□□□□ -0.66
Cux1P53564 Ccser1-201ENSMUST00000045522 2688 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cux1P53564 Kpna2-ps-201ENSMUST00000120025 1569 ntBASIC10.93□□□□□ -0.66
Cux1P53564 Amy1-202ENSMUST00000106540 1771 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cux1P53564 Prpf8-202ENSMUST00000102510 7249 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
Retrieved 100 of 76,532 protein–RNA pairs in 67.8 ms