Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Sorbs2-207ENSMUST00000130011 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC9.12□□□□□ -0.95
Rfx1P48377 Wnk1-218ENSMUST00000161512 1426 ntBASIC9.12□□□□□ -0.95
Rfx1P48377 Zbtb18-202ENSMUST00000094276 4204 ntAPPRIS ALT1 TSL 2 BASIC9.12□□□□□ -0.95
Rfx1P48377 Cnr1-202ENSMUST00000084736 5761 ntAPPRIS P1 TSL 2 BASIC9.12□□□□□ -0.95
Rfx1P48377 9130023H24Rik-201ENSMUST00000078816 3574 ntAPPRIS P1 BASIC9.12□□□□□ -0.95
Rfx1P48377 Gm37429-201ENSMUST00000193807 1799 ntBASIC9.12□□□□□ -0.95
Rfx1P48377 AC166159.1-201ENSMUST00000227154 1380 ntBASIC9.12□□□□□ -0.95
Rfx1P48377 Gm9597-202ENSMUST00000227632 1387 ntBASIC9.12□□□□□ -0.95
Rfx1P48377 Mgam-202ENSMUST00000201148 6488 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Rfx1P48377 Mgam-201ENSMUST00000071535 6488 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Rfx1P48377 Kcnmb2-203ENSMUST00000178668 2917 ntAPPRIS P1 TSL 5 BASIC9.11□□□□□ -0.95
Rfx1P48377 Phc1-208ENSMUST00000160696 4213 ntAPPRIS P3 TSL 1 (best) BASIC9.11□□□□□ -0.95
Rfx1P48377 Arhgap1-201ENSMUST00000090614 2866 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Rfx1P48377 Gm37548-201ENSMUST00000194519 3814 ntBASIC9.11□□□□□ -0.95
Rfx1P48377 Gm42899-201ENSMUST00000197034 2667 ntBASIC9.11□□□□□ -0.95
Rfx1P48377 Il15ra-217ENSMUST00000148748 1542 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
Rfx1P48377 CU024890.1-201ENSMUST00000221361 2019 ntBASIC9.11□□□□□ -0.95
Rfx1P48377 Arfgef1-201ENSMUST00000088615 6978 ntAPPRIS P1 TSL 5 BASIC9.11□□□□□ -0.95
Rfx1P48377 Frem1-202ENSMUST00000107230 9690 ntAPPRIS ALT2 TSL 5 BASIC9.11□□□□□ -0.95
Rfx1P48377 Zfp397-201ENSMUST00000060762 5472 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Rfx1P48377 Igkv8-27-201ENSMUST00000103381 300 ntAPPRIS P1 BASIC9.11□□□□□ -0.95
Rfx1P48377 Dtwd1-201ENSMUST00000110437 1276 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Rfx1P48377 Pinlyp-201ENSMUST00000011776 843 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Rfx1P48377 Gm15539-201ENSMUST00000118452 566 ntBASIC9.11□□□□□ -0.95
Rfx1P48377 Gm26069-201ENSMUST00000157497 277 ntBASIC9.11□□□□□ -0.95
Rfx1P48377 Vmn1r113-202ENSMUST00000173723 924 ntAPPRIS P1 BASIC9.11□□□□□ -0.95
Rfx1P48377 Vmn2r-ps131-201ENSMUST00000176094 1046 ntBASIC9.11□□□□□ -0.95
Rfx1P48377 Esp23-201ENSMUST00000178532 646 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Rfx1P48377 Fendrr-201ENSMUST00000181231 1092 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
Rfx1P48377 Gm29360-201ENSMUST00000185625 537 ntTSL 5 BASIC9.11□□□□□ -0.95
Rfx1P48377 4930403P22Rik-201ENSMUST00000192234 713 ntBASIC9.11□□□□□ -0.95
Rfx1P48377 Gm26901-204ENSMUST00000193732 631 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
Rfx1P48377 Anxa3-202ENSMUST00000196126 453 ntTSL 2 BASIC9.11□□□□□ -0.95
Rfx1P48377 Gm34144-201ENSMUST00000197039 259 ntBASIC9.11□□□□□ -0.95
Rfx1P48377 2510016D11Rik-201ENSMUST00000201971 985 ntBASIC9.11□□□□□ -0.95
Rfx1P48377 Crcp-206ENSMUST00000202756 600 ntTSL 2 BASIC9.11□□□□□ -0.95
Rfx1P48377 Gm44148-201ENSMUST00000203718 316 ntTSL 2 BASIC9.11□□□□□ -0.95
Rfx1P48377 Gm34418-201ENSMUST00000212879 309 ntTSL 5 BASIC9.11□□□□□ -0.95
Rfx1P48377 AC166078.1-201ENSMUST00000217211 584 ntTSL 2 BASIC9.11□□□□□ -0.95
Rfx1P48377 AC152946.3-201ENSMUST00000219424 280 ntBASIC9.11□□□□□ -0.95
Rfx1P48377 AC147639.1-201ENSMUST00000224216 661 ntBASIC9.11□□□□□ -0.95
Rfx1P48377 AC132468.1-201ENSMUST00000224706 499 ntBASIC9.11□□□□□ -0.95
Rfx1P48377 CT009515.2-201ENSMUST00000226126 736 ntBASIC9.11□□□□□ -0.95
Rfx1P48377 AC158954.1-201ENSMUST00000228272 1006 ntBASIC9.11□□□□□ -0.95
Rfx1P48377 Psmf1-201ENSMUST00000042452 3809 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Rfx1P48377 Olfr640-201ENSMUST00000084799 945 ntAPPRIS P1 BASIC9.11□□□□□ -0.95
Rfx1P48377 Olfr1320-201ENSMUST00000096449 960 ntAPPRIS P1 BASIC9.11□□□□□ -0.95
Rfx1P48377 Spink13-201ENSMUST00000097557 796 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Rfx1P48377 Dock8-201ENSMUST00000025831 7810 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Rfx1P48377 Gm43168-201ENSMUST00000201039 1612 ntBASIC9.11□□□□□ -0.95
Rfx1P48377 Gm37151-201ENSMUST00000194631 5007 ntBASIC9.11□□□□□ -0.95
Rfx1P48377 Olfr669-203ENSMUST00000214260 2336 ntAPPRIS P1 TSL 5 BASIC9.11□□□□□ -0.95
Rfx1P48377 Grem2-201ENSMUST00000055294 3745 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Rfx1P48377 Frmd7-201ENSMUST00000060650 2112 ntAPPRIS P1 TSL 5 BASIC9.11□□□□□ -0.95
Rfx1P48377 Rbms2-202ENSMUST00000099139 3302 ntAPPRIS ALT2 TSL 1 (best) BASIC9.11□□□□□ -0.95
Rfx1P48377 Arhgap6-203ENSMUST00000112127 3973 ntAPPRIS ALT2 TSL 1 (best) BASIC9.11□□□□□ -0.95
Rfx1P48377 Hsd3b2-202ENSMUST00000107022 3695 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Rfx1P48377 Synj2-204ENSMUST00000115785 3778 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Rfx1P48377 Chrnb3-201ENSMUST00000060943 4589 ntAPPRIS P4 TSL 1 (best) BASIC9.1□□□□□ -0.95
Rfx1P48377 Hsd11b1-201ENSMUST00000016338 1623 ntAPPRIS P2 TSL 1 (best) BASIC9.1□□□□□ -0.95
Rfx1P48377 Dclk1-208ENSMUST00000198437 4315 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Rfx1P48377 Ighv11-2-201ENSMUST00000103468 461 ntAPPRIS P1 BASIC9.1□□□□□ -0.95
Rfx1P48377 Gm13407-201ENSMUST00000118256 360 ntBASIC9.1□□□□□ -0.95
Rfx1P48377 Gm12024-201ENSMUST00000118819 1253 ntBASIC9.1□□□□□ -0.95
Rfx1P48377 Gm15361-201ENSMUST00000119320 444 ntBASIC9.1□□□□□ -0.95
Rfx1P48377 4930555O08Rik-201ENSMUST00000122821 668 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Rfx1P48377 Gm6689-201ENSMUST00000130905 481 ntBASIC9.1□□□□□ -0.95
Rfx1P48377 Gm15736-201ENSMUST00000141710 420 ntTSL 3 BASIC9.1□□□□□ -0.95
Rfx1P48377 Gm13833-201ENSMUST00000146766 719 ntTSL 3 BASIC9.1□□□□□ -0.95
Rfx1P48377 Fam229b-209ENSMUST00000149949 736 ntAPPRIS P1 TSL 3 BASIC9.1□□□□□ -0.95
Rfx1P48377 Gm12862-201ENSMUST00000150754 472 ntTSL 5 BASIC9.1□□□□□ -0.95
Rfx1P48377 Gm22484-201ENSMUST00000157992 306 ntBASIC9.1□□□□□ -0.95
Rfx1P48377 Gm2959-201ENSMUST00000169844 621 ntBASIC9.1□□□□□ -0.95
Rfx1P48377 Paip1-206ENSMUST00000173627 1233 ntTSL 5 BASIC9.1□□□□□ -0.95
Rfx1P48377 Esp38-201ENSMUST00000178880 243 ntAPPRIS P1 TSL 5 BASIC9.1□□□□□ -0.95
Rfx1P48377 Gm27403-201ENSMUST00000184662 214 ntBASIC9.1□□□□□ -0.95
Rfx1P48377 Gm7369-201ENSMUST00000192738 936 ntBASIC9.1□□□□□ -0.95
Rfx1P48377 Gm23927-202ENSMUST00000199928 216 ntBASIC9.1□□□□□ -0.95
Rfx1P48377 Gm35625-202ENSMUST00000211040 266 ntTSL 3 BASIC9.1□□□□□ -0.95
Rfx1P48377 AV026068-225ENSMUST00000225042 490 ntBASIC9.1□□□□□ -0.95
Rfx1P48377 AC167977.2-201ENSMUST00000225676 682 ntBASIC9.1□□□□□ -0.95
Rfx1P48377 1700018F24Rik-201ENSMUST00000031624 1122 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Rfx1P48377 Polr2k-201ENSMUST00000057177 601 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Rfx1P48377 Prl8a9-201ENSMUST00000006662 942 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Rfx1P48377 Gm4871-201ENSMUST00000071421 1119 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Rfx1P48377 Olfr1503-ps1-201ENSMUST00000076614 803 ntBASIC9.1□□□□□ -0.95
Rfx1P48377 Tcl1b3-201ENSMUST00000090990 1045 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Rfx1P48377 Mir486-201ENSMUST00000093576 128 ntBASIC9.1□□□□□ -0.95
Rfx1P48377 Bmx-202ENSMUST00000112265 3005 ntAPPRIS P2 TSL 1 (best) BASIC9.1□□□□□ -0.95
Rfx1P48377 Slc25a5-ps-203ENSMUST00000223928 1442 ntBASIC9.1□□□□□ -0.95
Rfx1P48377 Slc12a1-202ENSMUST00000110494 4740 ntAPPRIS ALT2 TSL 5 BASIC9.1□□□□□ -0.95
Rfx1P48377 Olfr1564-204ENSMUST00000213751 5418 ntAPPRIS ALT1 TSL 5 BASIC9.1□□□□□ -0.95
Rfx1P48377 Nsun7-201ENSMUST00000031109 2345 ntAPPRIS ALT2 TSL 5 BASIC9.1□□□□□ -0.95
Rfx1P48377 Kank4os-201ENSMUST00000133455 2251 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Rfx1P48377 Prdm11-202ENSMUST00000111274 11678 ntTSL 5 BASIC9.1□□□□□ -0.95
Rfx1P48377 Crbn-202ENSMUST00000113239 2084 ntAPPRIS P4 TSL 1 (best) BASIC9.09□□□□□ -0.95
Rfx1P48377 Adcy10-202ENSMUST00000111439 5193 ntAPPRIS ALT2 TSL 5 BASIC9.09□□□□□ -0.95
Rfx1P48377 Gm32389-201ENSMUST00000209312 1621 ntTSL 3 BASIC9.09□□□□□ -0.95
Rfx1P48377 Serbp1-201ENSMUST00000042990 15474 ntAPPRIS P3 TSL 1 (best) BASIC9.09□□□□□ -0.95
Rfx1P48377 Slc6a18-202ENSMUST00000109679 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC9.09□□□□□ -0.95
Retrieved 100 of 76,532 protein–RNA pairs in 56.6 ms