Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 AC155270.1-202ENSMUST00000221503 352 ntBASIC10.03□□□□□ -0.8
Usp40Q8BWR4 AC132239.1-201ENSMUST00000223157 773 ntTSL 5 BASIC10.03□□□□□ -0.8
Usp40Q8BWR4 CT009527.2-201ENSMUST00000225386 606 ntBASIC10.03□□□□□ -0.8
Usp40Q8BWR4 AC187103.4-201ENSMUST00000225399 300 ntBASIC10.03□□□□□ -0.8
Usp40Q8BWR4 AC154252.1-201ENSMUST00000226041 473 ntBASIC10.03□□□□□ -0.8
Usp40Q8BWR4 Prps2-201ENSMUST00000026839 3699 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Usp40Q8BWR4 Hamp2-201ENSMUST00000074671 420 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
Usp40Q8BWR4 Nfasc-202ENSMUST00000094569 9739 ntAPPRIS P3 TSL 1 (best) BASIC10.03□□□□□ -0.8
Usp40Q8BWR4 Mpdz-203ENSMUST00000107262 7518 ntAPPRIS ALT2 TSL 5 BASIC10.03□□□□□ -0.8
Usp40Q8BWR4 Eya3-203ENSMUST00000081726 5160 ntAPPRIS P4 TSL 1 (best) BASIC10.03□□□□□ -0.8
Usp40Q8BWR4 Olfr1388-202ENSMUST00000215226 3034 ntAPPRIS P1 TSL 5 BASIC10.03□□□□□ -0.8
Usp40Q8BWR4 Gm18305-201ENSMUST00000216532 2128 ntBASIC10.03□□□□□ -0.8
Usp40Q8BWR4 Synj2-206ENSMUST00000115787 4013 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Usp40Q8BWR4 Commd8-201ENSMUST00000013693 3895 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Usp40Q8BWR4 Brox-201ENSMUST00000057062 3430 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Usp40Q8BWR4 Srcap-206ENSMUST00000186954 9345 ntAPPRIS ALT2 TSL 5 BASIC10.03□□□□□ -0.8
Usp40Q8BWR4 Slc25a53-203ENSMUST00000113070 3140 ntTSL 5 BASIC10.02□□□□□ -0.8
Usp40Q8BWR4 Atf7ip-201ENSMUST00000032335 8059 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.8
Usp40Q8BWR4 Mlip-211ENSMUST00000184415 1726 ntAPPRIS ALT2 TSL 5 BASIC10.02□□□□□ -0.8
Usp40Q8BWR4 Zfp60-202ENSMUST00000108336 5896 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Usp40Q8BWR4 Xlr3a-202ENSMUST00000114524 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC10.02□□□□□ -0.81
Usp40Q8BWR4 Enox2-204ENSMUST00000114914 3936 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
Usp40Q8BWR4 Rpl15-ps1-201ENSMUST00000120694 564 ntBASIC10.02□□□□□ -0.81
Usp40Q8BWR4 1700086P04Rik-201ENSMUST00000149472 1009 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
Usp40Q8BWR4 1700021L23Rik-201ENSMUST00000153719 726 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
Usp40Q8BWR4 Gm24682-201ENSMUST00000158764 137 ntBASIC10.02□□□□□ -0.81
Usp40Q8BWR4 Gm2619-202ENSMUST00000166777 651 ntBASIC10.02□□□□□ -0.81
Usp40Q8BWR4 Rsl24d1-204ENSMUST00000169399 841 ntTSL 3 BASIC10.02□□□□□ -0.81
Usp40Q8BWR4 Esp36-201ENSMUST00000172814 1117 ntAPPRIS ALT2 TSL 1 (best) BASIC10.02□□□□□ -0.81
Usp40Q8BWR4 Gm18595-201ENSMUST00000175736 1068 ntBASIC10.02□□□□□ -0.81
Usp40Q8BWR4 Esp36-202ENSMUST00000177882 1117 ntAPPRIS P2 TSL 1 (best) BASIC10.02□□□□□ -0.81
Usp40Q8BWR4 Gm27360-201ENSMUST00000183487 80 ntBASIC10.02□□□□□ -0.81
Usp40Q8BWR4 Gm17790-201ENSMUST00000191545 1228 ntBASIC10.02□□□□□ -0.81
Usp40Q8BWR4 Gm43849-201ENSMUST00000201086 215 ntBASIC10.02□□□□□ -0.81
Usp40Q8BWR4 5033423K11Rik-202ENSMUST00000202802 1162 ntBASIC10.02□□□□□ -0.81
Usp40Q8BWR4 Gm45432-201ENSMUST00000210391 416 ntBASIC10.02□□□□□ -0.81
Usp40Q8BWR4 1700021G15Rik-201ENSMUST00000217671 528 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
Usp40Q8BWR4 4930471E15Rik-201ENSMUST00000221147 626 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
Usp40Q8BWR4 Gm10126-201ENSMUST00000221732 168 ntBASIC10.02□□□□□ -0.81
Usp40Q8BWR4 Gm19540-201ENSMUST00000221843 810 ntBASIC10.02□□□□□ -0.81
Usp40Q8BWR4 4930555F03Rik-201ENSMUST00000033963 717 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
Usp40Q8BWR4 BC028528-202ENSMUST00000090476 809 ntAPPRIS P3 TSL 2 BASIC10.02□□□□□ -0.81
Usp40Q8BWR4 Gm31343-201ENSMUST00000207967 2454 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
Usp40Q8BWR4 Gm37147-201ENSMUST00000193756 1498 ntTSL 5 BASIC10.02□□□□□ -0.81
Usp40Q8BWR4 Fndc3b-204ENSMUST00000195008 6886 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Usp40Q8BWR4 Itk-201ENSMUST00000020664 4272 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Usp40Q8BWR4 Specc1-203ENSMUST00000108709 6843 ntAPPRIS ALT2 TSL 5 BASIC10.02□□□□□ -0.81
Usp40Q8BWR4 Fam216b-201ENSMUST00000066437 2241 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Usp40Q8BWR4 Rnase4-201ENSMUST00000022428 1518 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Usp40Q8BWR4 Tmem161b-206ENSMUST00000225069 2414 ntBASIC10.02□□□□□ -0.81
Usp40Q8BWR4 8030451A03Rik-203ENSMUST00000141428 2618 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
Usp40Q8BWR4 AI506816-205ENSMUST00000199941 2804 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
Usp40Q8BWR4 Rassf6-206ENSMUST00000202784 1919 ntAPPRIS ALT2 TSL 1 (best) BASIC10.01□□□□□ -0.81
Usp40Q8BWR4 Nav1-202ENSMUST00000067414 13117 ntAPPRIS P2 TSL 5 BASIC10.01□□□□□ -0.81
Usp40Q8BWR4 Col12a1-201ENSMUST00000071750 11511 ntAPPRIS P1 TSL 5 BASIC10.01□□□□□ -0.81
Usp40Q8BWR4 Stox2-202ENSMUST00000110367 3424 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
Usp40Q8BWR4 Cxcl9-201ENSMUST00000113093 2889 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Usp40Q8BWR4 Zeb2-213ENSMUST00000176732 1762 ntTSL 5 BASIC10.01□□□□□ -0.81
Usp40Q8BWR4 R3hdm2-203ENSMUST00000105249 3654 ntAPPRIS ALT2 TSL 5 BASIC10.01□□□□□ -0.81
Usp40Q8BWR4 Fbxw7-203ENSMUST00000107678 4073 ntAPPRIS ALT1 TSL 5 BASIC10.01□□□□□ -0.81
Usp40Q8BWR4 Gm44863-201ENSMUST00000207613 1422 ntBASIC10.01□□□□□ -0.81
Usp40Q8BWR4 Ripor2-204ENSMUST00000110383 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC10.01□□□□□ -0.81
Usp40Q8BWR4 Slc12a6-202ENSMUST00000053666 6060 ntAPPRIS ALT1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Usp40Q8BWR4 CT010453.1-201ENSMUST00000226795 2201 ntBASIC10.01□□□□□ -0.81
Usp40Q8BWR4 Nolc1-201ENSMUST00000165017 3634 ntAPPRIS P2 TSL 1 (best) BASIC10.01□□□□□ -0.81
Usp40Q8BWR4 Ighv1-19-201ENSMUST00000103505 348 ntAPPRIS ALT2 BASIC10.01□□□□□ -0.81
Usp40Q8BWR4 Defb30-202ENSMUST00000111207 989 ntAPPRIS P2 TSL 1 (best) BASIC10.01□□□□□ -0.81
Usp40Q8BWR4 Gm649-201ENSMUST00000117284 1054 ntBASIC10.01□□□□□ -0.81
Usp40Q8BWR4 Gm14869-201ENSMUST00000119007 884 ntBASIC10.01□□□□□ -0.81
Usp40Q8BWR4 Gm12236-201ENSMUST00000152968 250 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
Usp40Q8BWR4 Gm25026-201ENSMUST00000175017 188 ntBASIC10.01□□□□□ -0.81
Usp40Q8BWR4 Gm22119-201ENSMUST00000175594 99 ntBASIC10.01□□□□□ -0.81
Usp40Q8BWR4 Trav21-dv12-201ENSMUST00000180938 360 ntAPPRIS P1 BASIC10.01□□□□□ -0.81
Usp40Q8BWR4 Gm26528-201ENSMUST00000181965 283 ntBASIC10.01□□□□□ -0.81
Usp40Q8BWR4 Gm29016-201ENSMUST00000187523 1013 ntTSL 3 BASIC10.01□□□□□ -0.81
Usp40Q8BWR4 Gm28289-201ENSMUST00000189331 315 ntTSL 5 BASIC10.01□□□□□ -0.81
Usp40Q8BWR4 Gm35024-201ENSMUST00000213359 972 ntTSL 5 BASIC10.01□□□□□ -0.81
Usp40Q8BWR4 AC133598.3-204ENSMUST00000224260 767 ntBASIC10.01□□□□□ -0.81
Usp40Q8BWR4 Frem3-201ENSMUST00000039695 6384 ntAPPRIS P1 TSL 5 BASIC10.01□□□□□ -0.81
Usp40Q8BWR4 Olfr862-201ENSMUST00000073765 1035 ntAPPRIS P1 BASIC10.01□□□□□ -0.81
Usp40Q8BWR4 Olfr66-201ENSMUST00000079117 936 ntAPPRIS P1 BASIC10.01□□□□□ -0.81
Usp40Q8BWR4 Calcr-205ENSMUST00000171613 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC10.01□□□□□ -0.81
Usp40Q8BWR4 Upf3b-201ENSMUST00000076265 2344 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Usp40Q8BWR4 Pdzd9-202ENSMUST00000127845 1327 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
Usp40Q8BWR4 4930447C04Rik-208ENSMUST00000136075 1970 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
Usp40Q8BWR4 Kansl1-203ENSMUST00000106971 5222 ntAPPRIS ALT2 TSL 5 BASIC10□□□□□ -0.81
Usp40Q8BWR4 Pak7-202ENSMUST00000077200 3957 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Usp40Q8BWR4 Pp2d1-201ENSMUST00000056198 2476 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Usp40Q8BWR4 Dgkb-201ENSMUST00000040500 6373 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Usp40Q8BWR4 Gm10568-201ENSMUST00000193244 1634 ntBASIC10□□□□□ -0.81
Usp40Q8BWR4 Ptk2b-208ENSMUST00000178730 3863 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Usp40Q8BWR4 Zc3h11a-201ENSMUST00000027736 4395 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Usp40Q8BWR4 Snapc4-201ENSMUST00000035427 4363 ntAPPRIS P2 TSL 1 (best) BASIC10□□□□□ -0.81
Usp40Q8BWR4 Slc12a1-203ENSMUST00000110495 4642 ntAPPRIS ALT2 TSL 5 BASIC10□□□□□ -0.81
Usp40Q8BWR4 Dusp18-201ENSMUST00000055931 4632 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Usp40Q8BWR4 AC187103.1-201ENSMUST00000224641 1475 ntBASIC10□□□□□ -0.81
Usp40Q8BWR4 Dgkh-204ENSMUST00000227767 3319 ntBASIC10□□□□□ -0.81
Usp40Q8BWR4 Igkv4-81-201ENSMUST00000103340 290 ntAPPRIS P1 BASIC10□□□□□ -0.81
Usp40Q8BWR4 Gm25498-201ENSMUST00000104424 129 ntBASIC10□□□□□ -0.81
Usp40Q8BWR4 Trappc1-204ENSMUST00000108662 635 ntTSL 2 BASIC10□□□□□ -0.81
Retrieved 100 of 76,532 protein–RNA pairs in 51.3 ms