Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Igkv8-21-201ENSMUST00000103387 382 ntAPPRIS P1 BASIC8.62□□□□□ -1.03
Traf1P39428 Gm25916-201ENSMUST00000104263 131 ntBASIC8.62□□□□□ -1.03
Traf1P39428 Gm16221-201ENSMUST00000117331 393 ntBASIC8.62□□□□□ -1.03
Traf1P39428 Gm15047-201ENSMUST00000118891 454 ntBASIC8.62□□□□□ -1.03
Traf1P39428 Sh3d2c-ps1-201ENSMUST00000121498 904 ntBASIC8.62□□□□□ -1.03
Traf1P39428 Nol12-205ENSMUST00000149580 646 ntTSL 5 BASIC8.62□□□□□ -1.03
Traf1P39428 Olfr760-ps1-201ENSMUST00000172563 748 ntBASIC8.62□□□□□ -1.03
Traf1P39428 Gm20702-201ENSMUST00000176181 460 ntBASIC8.62□□□□□ -1.03
Traf1P39428 B230112G18Rik-201ENSMUST00000192979 851 ntBASIC8.62□□□□□ -1.03
Traf1P39428 1700113A16Rik-202ENSMUST00000197172 776 ntTSL 2 BASIC8.62□□□□□ -1.03
Traf1P39428 4930580E04Rik-201ENSMUST00000197377 690 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
Traf1P39428 Ube2n-ps1-201ENSMUST00000201768 459 ntBASIC8.62□□□□□ -1.03
Traf1P39428 Gm44931-201ENSMUST00000206056 545 ntBASIC8.62□□□□□ -1.03
Traf1P39428 AC121793.1-201ENSMUST00000214211 633 ntTSL 5 BASIC8.62□□□□□ -1.03
Traf1P39428 AC120002.1-201ENSMUST00000218456 331 ntBASIC8.62□□□□□ -1.03
Traf1P39428 AC122937.2-201ENSMUST00000228258 1051 ntBASIC8.62□□□□□ -1.03
Traf1P39428 Gkn1-201ENSMUST00000032129 1250 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
Traf1P39428 Ddx19b-201ENSMUST00000040241 6612 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
Traf1P39428 Gm6011-201ENSMUST00000211736 1796 ntBASIC8.62□□□□□ -1.03
Traf1P39428 Fer1l6-203ENSMUST00000161028 5714 ntAPPRIS P1 TSL 5 BASIC8.62□□□□□ -1.03
Traf1P39428 Wdfy4-201ENSMUST00000061753 9681 ntAPPRIS P2 TSL 5 BASIC8.62□□□□□ -1.03
Traf1P39428 AC105407.2-205ENSMUST00000224680 2733 ntBASIC8.62□□□□□ -1.03
Traf1P39428 Mllt3-202ENSMUST00000126353 1956 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
Traf1P39428 AC107757.2-201ENSMUST00000226370 1466 ntBASIC8.62□□□□□ -1.03
Traf1P39428 Ankrd49-206ENSMUST00000216372 2679 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
Traf1P39428 Narf-201ENSMUST00000103015 4395 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
Traf1P39428 Efl1-201ENSMUST00000039881 3610 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
Traf1P39428 Il15ra-214ENSMUST00000138349 1936 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
Traf1P39428 Rere-201ENSMUST00000105680 6503 ntAPPRIS ALT2 TSL 5 BASIC8.62□□□□□ -1.03
Traf1P39428 Gm37410-201ENSMUST00000193623 3039 ntBASIC8.62□□□□□ -1.03
Traf1P39428 Ogfod1-203ENSMUST00000109556 5310 ntAPPRIS P2 TSL 1 (best) BASIC8.61□□□□□ -1.03
Traf1P39428 Rtel1-201ENSMUST00000048608 4135 ntAPPRIS ALT2 TSL 1 (best) BASIC8.61□□□□□ -1.03
Traf1P39428 Olfr766-ps1-201ENSMUST00000204515 2909 ntAPPRIS P1 TSL 5 BASIC8.61□□□□□ -1.03
Traf1P39428 Slc12a1-202ENSMUST00000110494 4740 ntAPPRIS ALT2 TSL 5 BASIC8.61□□□□□ -1.03
Traf1P39428 Vmn1r44-208ENSMUST00000227456 2031 ntAPPRIS P1 BASIC8.61□□□□□ -1.03
Traf1P39428 Gm37457-201ENSMUST00000193639 2433 ntBASIC8.61□□□□□ -1.03
Traf1P39428 Itpr2-202ENSMUST00000079573 11679 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
Traf1P39428 Vmn1r51-213ENSMUST00000228880 4353 ntAPPRIS P1 BASIC8.61□□□□□ -1.03
Traf1P39428 AC164433.1-201ENSMUST00000226138 1544 ntBASIC8.61□□□□□ -1.03
Traf1P39428 9630028H03Rik-201ENSMUST00000129868 2364 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
Traf1P39428 Scn11a-201ENSMUST00000070617 5837 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
Traf1P39428 Zfp518b-201ENSMUST00000057258 6804 ntAPPRIS P1 TSL 3 BASIC8.61□□□□□ -1.03
Traf1P39428 Gm15209-201ENSMUST00000117703 400 ntBASIC8.61□□□□□ -1.03
Traf1P39428 Gm16330-201ENSMUST00000128324 297 ntBASIC8.61□□□□□ -1.03
Traf1P39428 Gm10660-201ENSMUST00000148610 1203 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
Traf1P39428 Gtsf1-209ENSMUST00000153930 799 ntAPPRIS P1 TSL 5 BASIC8.61□□□□□ -1.03
Traf1P39428 Mir1932-201ENSMUST00000157390 90 ntBASIC8.61□□□□□ -1.03
Traf1P39428 Gm22702-201ENSMUST00000175372 69 ntBASIC8.61□□□□□ -1.03
Traf1P39428 Gm26179-201ENSMUST00000177723 132 ntBASIC8.61□□□□□ -1.03
Traf1P39428 9430069I07Rik-201ENSMUST00000179647 336 ntAPPRIS P1 TSL 5 BASIC8.61□□□□□ -1.03
Traf1P39428 Gm9423-201ENSMUST00000183173 997 ntBASIC8.61□□□□□ -1.03
Traf1P39428 Mir6769b-201ENSMUST00000184793 60 ntBASIC8.61□□□□□ -1.03
Traf1P39428 Gm9745-202ENSMUST00000187196 858 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
Traf1P39428 Gm18875-201ENSMUST00000188563 882 ntBASIC8.61□□□□□ -1.03
Traf1P39428 Gm37294-201ENSMUST00000193461 494 ntTSL 3 BASIC8.61□□□□□ -1.03
Traf1P39428 Gm42752-201ENSMUST00000198394 1106 ntBASIC8.61□□□□□ -1.03
Traf1P39428 Gm43122-201ENSMUST00000201752 354 ntTSL 3 BASIC8.61□□□□□ -1.03
Traf1P39428 Rfpl4-203ENSMUST00000208468 1238 ntAPPRIS ALT2 TSL 2 BASIC8.61□□□□□ -1.03
Traf1P39428 Gm45478-201ENSMUST00000209472 211 ntBASIC8.61□□□□□ -1.03
Traf1P39428 Gm34474-201ENSMUST00000209645 356 ntTSL 5 BASIC8.61□□□□□ -1.03
Traf1P39428 Gm32515-201ENSMUST00000219396 350 ntTSL 2 BASIC8.61□□□□□ -1.03
Traf1P39428 E130119H09Rik-201ENSMUST00000223176 978 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
Traf1P39428 9430069I07Rik-202ENSMUST00000227772 572 ntAPPRIS P1 BASIC8.61□□□□□ -1.03
Traf1P39428 Vmn1r198-201ENSMUST00000091733 903 ntAPPRIS P2 BASIC8.61□□□□□ -1.03
Traf1P39428 Olfr1243-201ENSMUST00000099775 918 ntAPPRIS P1 BASIC8.61□□□□□ -1.03
Traf1P39428 A730011C13Rik-202ENSMUST00000141787 1877 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
Traf1P39428 Saa4-201ENSMUST00000006952 2094 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
Traf1P39428 Gm26720-201ENSMUST00000181260 3538 ntTSL 5 BASIC8.61□□□□□ -1.03
Traf1P39428 Gm8844-201ENSMUST00000119460 2614 ntBASIC8.61□□□□□ -1.03
Traf1P39428 Pmfbp1-201ENSMUST00000034162 3396 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
Traf1P39428 Pank1-202ENSMUST00000112460 2759 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
Traf1P39428 Zscan4b-202ENSMUST00000210847 1779 ntAPPRIS P1 TSL 5 BASIC8.61□□□□□ -1.03
Traf1P39428 Dock5-201ENSMUST00000039135 9988 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
Traf1P39428 2610021A01Rik-201ENSMUST00000163475 4004 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
Traf1P39428 Snx10-207ENSMUST00000179365 2464 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
Traf1P39428 Ddb1-201ENSMUST00000025649 4155 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
Traf1P39428 Selenoi-203ENSMUST00000145167 6803 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
Traf1P39428 AC138221.1-201ENSMUST00000216180 4944 ntAPPRIS P1 TSL 5 BASIC8.6□□□□□ -1.03
Traf1P39428 Ggta1-205ENSMUST00000113002 3391 ntAPPRIS ALT2 TSL 1 (best) BASIC8.6□□□□□ -1.03
Traf1P39428 Gm3772-201ENSMUST00000221404 1887 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
Traf1P39428 Gatad2b-204ENSMUST00000199607 2418 ntAPPRIS P1 TSL 5 BASIC8.6□□□□□ -1.03
Traf1P39428 Alkbh8-206ENSMUST00000212294 2584 ntAPPRIS ALT2 TSL 1 (best) BASIC8.6□□□□□ -1.03
Traf1P39428 Skiv2l2-201ENSMUST00000022281 3689 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
Traf1P39428 Ighv7-4-201ENSMUST00000103477 360 ntAPPRIS ALT2 BASIC8.6□□□□□ -1.03
Traf1P39428 Ighv1-63-201ENSMUST00000103534 351 ntAPPRIS P1 BASIC8.6□□□□□ -1.03
Traf1P39428 Plac1-202ENSMUST00000114843 1201 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
Traf1P39428 Gm14279-201ENSMUST00000117142 332 ntBASIC8.6□□□□□ -1.03
Traf1P39428 Rpl35a-ps2-201ENSMUST00000117444 333 ntBASIC8.6□□□□□ -1.03
Traf1P39428 Gm10243-201ENSMUST00000117571 333 ntBASIC8.6□□□□□ -1.03
Traf1P39428 Rpl35a-ps4-201ENSMUST00000121779 333 ntBASIC8.6□□□□□ -1.03
Traf1P39428 Rpl35a-ps3-201ENSMUST00000147311 333 ntBASIC8.6□□□□□ -1.03
Traf1P39428 Rpl35a-ps6-201ENSMUST00000148282 333 ntBASIC8.6□□□□□ -1.03
Traf1P39428 Gm13840-201ENSMUST00000149608 256 ntTSL 2 BASIC8.6□□□□□ -1.03
Traf1P39428 Gm7651-201ENSMUST00000173398 901 ntBASIC8.6□□□□□ -1.03
Traf1P39428 Obox4-ps31-201ENSMUST00000177210 1137 ntBASIC8.6□□□□□ -1.03
Traf1P39428 Gm18848-201ENSMUST00000182069 792 ntBASIC8.6□□□□□ -1.03
Traf1P39428 Pea15b-201ENSMUST00000182806 387 ntBASIC8.6□□□□□ -1.03
Traf1P39428 1700054A03Rik-201ENSMUST00000187368 780 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
Traf1P39428 4930565D16Rik-201ENSMUST00000192777 1112 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
Traf1P39428 Gm33370-201ENSMUST00000195935 489 ntTSL 2 BASIC8.6□□□□□ -1.03
Retrieved 100 of 76,532 protein–RNA pairs in 67.5 ms