Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm8623-201ENSMUST00000071573 436 ntBASIC5.92□□□□□ -1.46
Hmgb3O54879 Cytl1-201ENSMUST00000073554 974 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
Hmgb3O54879 Glipr1-201ENSMUST00000074805 1081 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
Hmgb3O54879 n-R5s193-201ENSMUST00000082864 109 ntBASIC5.92□□□□□ -1.46
Hmgb3O54879 Gm16410-201ENSMUST00000094550 774 ntBASIC5.92□□□□□ -1.46
Hmgb3O54879 Vmn2r41-201ENSMUST00000168807 3617 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
Hmgb3O54879 Rnase4-201ENSMUST00000022428 1518 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
Hmgb3O54879 Tctex1d1-202ENSMUST00000116317 1772 ntAPPRIS P3 TSL 5 BASIC5.92□□□□□ -1.46
Hmgb3O54879 Cyp2c69-201ENSMUST00000168838 1770 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
Hmgb3O54879 Mug1-201ENSMUST00000032228 4657 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
Hmgb3O54879 AC160863.4-201ENSMUST00000218099 1334 ntTSL 5 BASIC5.92□□□□□ -1.46
Hmgb3O54879 Vwde-201ENSMUST00000054530 3979 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
Hmgb3O54879 Atp5s-204ENSMUST00000220916 1599 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
Hmgb3O54879 Bank1-201ENSMUST00000041577 3268 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
Hmgb3O54879 Gm8276-201ENSMUST00000192231 1812 ntBASIC5.92□□□□□ -1.46
Hmgb3O54879 Gm10603-202ENSMUST00000184420 4520 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
Hmgb3O54879 Mfap3-203ENSMUST00000108849 4827 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
Hmgb3O54879 Creb5-203ENSMUST00000203528 7917 ntAPPRIS P2 TSL 5 BASIC5.92□□□□□ -1.46
Hmgb3O54879 Lmo3-204ENSMUST00000162772 3664 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
Hmgb3O54879 Pecam1-204ENSMUST00000106796 3441 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
Hmgb3O54879 Gm10735-201ENSMUST00000099162 2943 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
Hmgb3O54879 Slfn10-ps-202ENSMUST00000152760 2673 ntBASIC5.92□□□□□ -1.46
Hmgb3O54879 C87499-201ENSMUST00000053304 1901 ntAPPRIS P2 TSL 1 (best) BASIC5.91□□□□□ -1.46
Hmgb3O54879 Serpinb1a-201ENSMUST00000076352 1918 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
Hmgb3O54879 Olfr396-ps1-201ENSMUST00000143750 1675 ntAPPRIS P1 TSL 3 BASIC5.91□□□□□ -1.46
Hmgb3O54879 Iars-202ENSMUST00000164260 3789 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
Hmgb3O54879 Ctnna2-206ENSMUST00000162273 3277 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
Hmgb3O54879 Pecam1-202ENSMUST00000080853 3283 ntAPPRIS P4 TSL 1 (best) BASIC5.91□□□□□ -1.46
Hmgb3O54879 Gm17529-201ENSMUST00000180738 3093 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
Hmgb3O54879 Dnase1-201ENSMUST00000006136 1480 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
Hmgb3O54879 Zfp51-201ENSMUST00000039577 2600 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
Hmgb3O54879 Ighv1-22-201ENSMUST00000103507 351 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
Hmgb3O54879 Trappc1-204ENSMUST00000108662 635 ntTSL 2 BASIC5.91□□□□□ -1.46
Hmgb3O54879 Olfr329-ps-202ENSMUST00000108823 1060 ntAPPRIS P2 BASIC5.91□□□□□ -1.46
Hmgb3O54879 Gm11907-201ENSMUST00000118918 1007 ntBASIC5.91□□□□□ -1.46
Hmgb3O54879 Gm12754-201ENSMUST00000121908 454 ntBASIC5.91□□□□□ -1.46
Hmgb3O54879 Gm16015-201ENSMUST00000154897 390 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
Hmgb3O54879 Vmn1r190-ps-201ENSMUST00000155950 903 ntBASIC5.91□□□□□ -1.46
Hmgb3O54879 Gm25372-201ENSMUST00000158161 255 ntBASIC5.91□□□□□ -1.46
Hmgb3O54879 Gm27168-201ENSMUST00000183394 361 ntTSL 3 BASIC5.91□□□□□ -1.46
Hmgb3O54879 1700016D06Rik-202ENSMUST00000190741 604 ntTSL 2 BASIC5.91□□□□□ -1.46
Hmgb3O54879 Gm21698-202ENSMUST00000191203 2995 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
Hmgb3O54879 Spink8-202ENSMUST00000198988 768 ntAPPRIS P2 TSL 1 (best) BASIC5.91□□□□□ -1.46
Hmgb3O54879 Gm43008-201ENSMUST00000202346 286 ntBASIC5.91□□□□□ -1.46
Hmgb3O54879 Rtp4-204ENSMUST00000211349 842 ntTSL 3 BASIC5.91□□□□□ -1.46
Hmgb3O54879 Gm39383-201ENSMUST00000216894 1009 ntTSL 5 BASIC5.91□□□□□ -1.46
Hmgb3O54879 AC151904.2-201ENSMUST00000218683 1177 ntBASIC5.91□□□□□ -1.46
Hmgb3O54879 CT009738.1-201ENSMUST00000219031 809 ntBASIC5.91□□□□□ -1.46
Hmgb3O54879 AC130829.2-201ENSMUST00000222931 127 ntBASIC5.91□□□□□ -1.46
Hmgb3O54879 Gm46323-201ENSMUST00000223136 628 ntTSL 5 BASIC5.91□□□□□ -1.46
Hmgb3O54879 AC154640.1-204ENSMUST00000227105 648 ntBASIC5.91□□□□□ -1.46
Hmgb3O54879 Snapc5-201ENSMUST00000034965 1228 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
Hmgb3O54879 Rps29-201ENSMUST00000037023 390 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
Hmgb3O54879 Olfr1418-201ENSMUST00000079875 1072 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
Hmgb3O54879 Fam47e-201ENSMUST00000082382 750 ntTSL 5 BASIC5.91□□□□□ -1.46
Hmgb3O54879 Olfr1320-201ENSMUST00000096449 960 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
Hmgb3O54879 1700026J12Rik-201ENSMUST00000098226 1127 ntTSL 5 BASIC5.91□□□□□ -1.46
Hmgb3O54879 Olfr11-202ENSMUST00000205631 3265 ntAPPRIS P1 TSL 3 BASIC5.91□□□□□ -1.46
Hmgb3O54879 Dmtf1-207ENSMUST00000183973 2408 ntAPPRIS ALT1 TSL 5 BASIC5.91□□□□□ -1.46
Hmgb3O54879 BC035044-201ENSMUST00000160290 1568 ntAPPRIS P2 TSL 1 (best) BASIC5.91□□□□□ -1.46
Hmgb3O54879 AC152922.2-201ENSMUST00000213353 3879 ntBASIC5.91□□□□□ -1.46
Hmgb3O54879 Gm37254-201ENSMUST00000193542 3901 ntBASIC5.91□□□□□ -1.46
Hmgb3O54879 Ap4e1-201ENSMUST00000002063 4600 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
Hmgb3O54879 Mdm4-202ENSMUST00000067429 3490 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
Hmgb3O54879 Gm13102-202ENSMUST00000097800 2293 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
Hmgb3O54879 Tatdn1-201ENSMUST00000110155 1364 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
Hmgb3O54879 Eci2-203ENSMUST00000110251 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
Hmgb3O54879 Gm11853-201ENSMUST00000119687 1384 ntBASIC5.91□□□□□ -1.46
Hmgb3O54879 Kbtbd3-202ENSMUST00000212221 2313 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
Hmgb3O54879 BC003331-201ENSMUST00000006167 1716 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
Hmgb3O54879 AC022682.2-202ENSMUST00000224394 3943 ntBASIC5.91□□□□□ -1.46
Hmgb3O54879 Gm10743-201ENSMUST00000219611 2358 ntBASIC5.91□□□□□ -1.46
Hmgb3O54879 Gm20767-202ENSMUST00000225683 1427 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
Hmgb3O54879 Vmn1r52-204ENSMUST00000227578 2370 ntBASIC5.91□□□□□ -1.46
Hmgb3O54879 Kcnj15-207ENSMUST00000113861 3385 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
Hmgb3O54879 Gm37347-201ENSMUST00000193969 3071 ntBASIC5.9□□□□□ -1.46
Hmgb3O54879 Adgrg2-207ENSMUST00000112408 4708 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
Hmgb3O54879 Gm42603-201ENSMUST00000199893 2146 ntBASIC5.9□□□□□ -1.46
Hmgb3O54879 Gm29450-201ENSMUST00000189657 1497 ntTSL 5 BASIC5.9□□□□□ -1.46
Hmgb3O54879 Gm29278-202ENSMUST00000189701 1497 ntTSL 5 BASIC5.9□□□□□ -1.46
Hmgb3O54879 Chl1-206ENSMUST00000205098 2464 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
Hmgb3O54879 Gm42678-201ENSMUST00000197163 2221 ntBASIC5.9□□□□□ -1.46
Hmgb3O54879 Gm43792-201ENSMUST00000202492 2210 ntBASIC5.9□□□□□ -1.46
Hmgb3O54879 St3gal6-202ENSMUST00000114358 2264 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
Hmgb3O54879 Olfr1097-202ENSMUST00000217403 4430 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.46
Hmgb3O54879 Cnot2-210ENSMUST00000168036 2693 ntTSL 5 BASIC5.9□□□□□ -1.46
Hmgb3O54879 Zfp37-204ENSMUST00000220873 1985 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.46
Hmgb3O54879 Cd244-201ENSMUST00000004829 3760 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
Hmgb3O54879 Speer4d-202ENSMUST00000119100 857 ntTSL 2 BASIC5.9□□□□□ -1.46
Hmgb3O54879 Gm4918-201ENSMUST00000119420 1084 ntBASIC5.9□□□□□ -1.46
Hmgb3O54879 Rps18-ps1-201ENSMUST00000120838 459 ntBASIC5.9□□□□□ -1.46
Hmgb3O54879 Gm15976-201ENSMUST00000129701 429 ntTSL 3 BASIC5.9□□□□□ -1.46
Hmgb3O54879 Gm5970-201ENSMUST00000131638 1216 ntBASIC5.9□□□□□ -1.46
Hmgb3O54879 Gm42791-202ENSMUST00000147473 727 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.46
Hmgb3O54879 Gm26787-201ENSMUST00000180474 608 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
Hmgb3O54879 4930556G22Rik-201ENSMUST00000185689 741 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
Hmgb3O54879 1700021A07Rik-202ENSMUST00000187763 485 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
Hmgb3O54879 Ly6a-204ENSMUST00000187994 955 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
Hmgb3O54879 Gm20918-202ENSMUST00000188637 1227 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
Hmgb3O54879 Gm19412-202ENSMUST00000189156 569 ntTSL 3 BASIC5.9□□□□□ -1.46
Retrieved 100 of 76,532 protein–RNA pairs in 52.7 ms