Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cpsf3Q9QXK7 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cpsf3Q9QXK7 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cpsf3Q9QXK7 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cpsf3Q9QXK7 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cpsf3Q9QXK7 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC19.89■□□□□ 0.77
Cpsf3Q9QXK7 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
Cpsf3Q9QXK7 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Cpsf3Q9QXK7 Gm9885-202ENSMUST00000186234 2209 ntBASIC19.88■□□□□ 0.77
Cpsf3Q9QXK7 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cpsf3Q9QXK7 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cpsf3Q9QXK7 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Cpsf3Q9QXK7 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC19.88■□□□□ 0.77
Cpsf3Q9QXK7 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cpsf3Q9QXK7 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Cpsf3Q9QXK7 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cpsf3Q9QXK7 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC19.88■□□□□ 0.77
Cpsf3Q9QXK7 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cpsf3Q9QXK7 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cpsf3Q9QXK7 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cpsf3Q9QXK7 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cpsf3Q9QXK7 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Cpsf3Q9QXK7 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC19.87■□□□□ 0.77
Cpsf3Q9QXK7 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC19.87■□□□□ 0.77
Cpsf3Q9QXK7 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC19.87■□□□□ 0.77
Cpsf3Q9QXK7 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Cpsf3Q9QXK7 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Cpsf3Q9QXK7 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
Cpsf3Q9QXK7 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Cpsf3Q9QXK7 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Cpsf3Q9QXK7 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Cpsf3Q9QXK7 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Cpsf3Q9QXK7 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Cpsf3Q9QXK7 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Cpsf3Q9QXK7 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Cpsf3Q9QXK7 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Cpsf3Q9QXK7 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Cpsf3Q9QXK7 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC19.86■□□□□ 0.77
Cpsf3Q9QXK7 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC19.86■□□□□ 0.77
Cpsf3Q9QXK7 Gm5297-201ENSMUST00000198555 1171 ntBASIC19.86■□□□□ 0.77
Cpsf3Q9QXK7 Gm44672-201ENSMUST00000206944 1098 ntBASIC19.86■□□□□ 0.77
Cpsf3Q9QXK7 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Cpsf3Q9QXK7 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Cpsf3Q9QXK7 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC19.86■□□□□ 0.77
Cpsf3Q9QXK7 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Cpsf3Q9QXK7 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Cpsf3Q9QXK7 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Cpsf3Q9QXK7 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
Cpsf3Q9QXK7 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC19.85■□□□□ 0.77
Cpsf3Q9QXK7 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC19.85■□□□□ 0.77
Cpsf3Q9QXK7 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC19.85■□□□□ 0.77
Cpsf3Q9QXK7 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
Cpsf3Q9QXK7 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Cpsf3Q9QXK7 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Cpsf3Q9QXK7 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC19.84■□□□□ 0.77
Cpsf3Q9QXK7 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Cpsf3Q9QXK7 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC19.84■□□□□ 0.77
Cpsf3Q9QXK7 Gm12669-201ENSMUST00000122162 1009 ntBASIC19.84■□□□□ 0.77
Cpsf3Q9QXK7 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Cpsf3Q9QXK7 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Cpsf3Q9QXK7 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Cpsf3Q9QXK7 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Cpsf3Q9QXK7 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Cpsf3Q9QXK7 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Cpsf3Q9QXK7 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC19.84■□□□□ 0.77
Cpsf3Q9QXK7 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Cpsf3Q9QXK7 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Cpsf3Q9QXK7 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Cpsf3Q9QXK7 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Cpsf3Q9QXK7 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Cpsf3Q9QXK7 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Cpsf3Q9QXK7 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Cpsf3Q9QXK7 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Cpsf3Q9QXK7 Gm12527-201ENSMUST00000117967 564 ntBASIC19.83■□□□□ 0.77
Cpsf3Q9QXK7 Gm37805-201ENSMUST00000192612 1094 ntBASIC19.83■□□□□ 0.77
Cpsf3Q9QXK7 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Cpsf3Q9QXK7 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
Cpsf3Q9QXK7 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Cpsf3Q9QXK7 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Cpsf3Q9QXK7 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Cpsf3Q9QXK7 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Cpsf3Q9QXK7 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Cpsf3Q9QXK7 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Cpsf3Q9QXK7 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Cpsf3Q9QXK7 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Cpsf3Q9QXK7 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Cpsf3Q9QXK7 Gm7856-201ENSMUST00000117514 1493 ntBASIC19.82■□□□□ 0.76
Cpsf3Q9QXK7 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Cpsf3Q9QXK7 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Cpsf3Q9QXK7 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Cpsf3Q9QXK7 Gm44549-201ENSMUST00000208351 577 ntBASIC19.82■□□□□ 0.76
Cpsf3Q9QXK7 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Cpsf3Q9QXK7 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Cpsf3Q9QXK7 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC19.82■□□□□ 0.76
Cpsf3Q9QXK7 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Cpsf3Q9QXK7 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Cpsf3Q9QXK7 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Cpsf3Q9QXK7 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC19.82■□□□□ 0.76
Cpsf3Q9QXK7 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Cpsf3Q9QXK7 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms