Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Lima1Q9ERG0 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Lima1Q9ERG0 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Lima1Q9ERG0 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Lima1Q9ERG0 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC18.2■□□□□ 0.5
Lima1Q9ERG0 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Lima1Q9ERG0 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Lima1Q9ERG0 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Lima1Q9ERG0 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Lima1Q9ERG0 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC18.2■□□□□ 0.5
Lima1Q9ERG0 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Lima1Q9ERG0 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Lima1Q9ERG0 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Lima1Q9ERG0 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Lima1Q9ERG0 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Lima1Q9ERG0 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Lima1Q9ERG0 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Lima1Q9ERG0 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Lima1Q9ERG0 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Lima1Q9ERG0 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Lima1Q9ERG0 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Lima1Q9ERG0 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Lima1Q9ERG0 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Lima1Q9ERG0 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
Lima1Q9ERG0 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Lima1Q9ERG0 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Lima1Q9ERG0 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Lima1Q9ERG0 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Lima1Q9ERG0 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Lima1Q9ERG0 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Lima1Q9ERG0 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Lima1Q9ERG0 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Lima1Q9ERG0 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Lima1Q9ERG0 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Lima1Q9ERG0 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Lima1Q9ERG0 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Lima1Q9ERG0 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Lima1Q9ERG0 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Lima1Q9ERG0 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Lima1Q9ERG0 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Lima1Q9ERG0 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Lima1Q9ERG0 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Lima1Q9ERG0 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC18.17■□□□□ 0.5
Lima1Q9ERG0 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Lima1Q9ERG0 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Lima1Q9ERG0 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Lima1Q9ERG0 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Lima1Q9ERG0 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Lima1Q9ERG0 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Lima1Q9ERG0 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Lima1Q9ERG0 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Lima1Q9ERG0 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Lima1Q9ERG0 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Lima1Q9ERG0 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Lima1Q9ERG0 Gm11421-201ENSMUST00000122124 294 ntBASIC18.16■□□□□ 0.5
Lima1Q9ERG0 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC18.16■□□□□ 0.5
Lima1Q9ERG0 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC18.16■□□□□ 0.5
Lima1Q9ERG0 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Lima1Q9ERG0 AC137127.1-201ENSMUST00000213466 1078 ntBASIC18.16■□□□□ 0.5
Lima1Q9ERG0 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Lima1Q9ERG0 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Lima1Q9ERG0 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Lima1Q9ERG0 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Lima1Q9ERG0 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Lima1Q9ERG0 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Lima1Q9ERG0 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Lima1Q9ERG0 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC18.16■□□□□ 0.5
Lima1Q9ERG0 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Lima1Q9ERG0 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Lima1Q9ERG0 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Lima1Q9ERG0 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Lima1Q9ERG0 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Lima1Q9ERG0 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC18.15■□□□□ 0.5
Lima1Q9ERG0 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Lima1Q9ERG0 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Lima1Q9ERG0 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lima1Q9ERG0 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lima1Q9ERG0 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Lima1Q9ERG0 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lima1Q9ERG0 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC18.15■□□□□ 0.5
Lima1Q9ERG0 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lima1Q9ERG0 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Lima1Q9ERG0 Gm5828-201ENSMUST00000071842 1860 ntBASIC18.15■□□□□ 0.5
Lima1Q9ERG0 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Lima1Q9ERG0 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lima1Q9ERG0 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lima1Q9ERG0 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lima1Q9ERG0 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lima1Q9ERG0 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.5
Lima1Q9ERG0 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.5
Lima1Q9ERG0 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
Lima1Q9ERG0 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Lima1Q9ERG0 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Lima1Q9ERG0 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Lima1Q9ERG0 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC18.14■□□□□ 0.49
Lima1Q9ERG0 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Lima1Q9ERG0 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Lima1Q9ERG0 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Lima1Q9ERG0 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Lima1Q9ERG0 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 33.8 ms