Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trub1Q8C0D0 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Trub1Q8C0D0 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trub1Q8C0D0 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Trub1Q8C0D0 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trub1Q8C0D0 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trub1Q8C0D0 Gm10849-201ENSMUST00000100397 618 ntBASIC19.05■□□□□ 0.64
Trub1Q8C0D0 AC107452.1-201ENSMUST00000227963 481 ntBASIC19.05■□□□□ 0.64
Trub1Q8C0D0 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trub1Q8C0D0 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trub1Q8C0D0 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trub1Q8C0D0 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trub1Q8C0D0 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trub1Q8C0D0 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trub1Q8C0D0 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trub1Q8C0D0 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Trub1Q8C0D0 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trub1Q8C0D0 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trub1Q8C0D0 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
Trub1Q8C0D0 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
Trub1Q8C0D0 Gm8495-201ENSMUST00000188740 694 ntBASIC19.04■□□□□ 0.64
Trub1Q8C0D0 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
Trub1Q8C0D0 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Trub1Q8C0D0 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC19.04■□□□□ 0.64
Trub1Q8C0D0 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
Trub1Q8C0D0 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC19.04■□□□□ 0.64
Trub1Q8C0D0 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
Trub1Q8C0D0 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trub1Q8C0D0 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trub1Q8C0D0 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trub1Q8C0D0 AC160393.1-201ENSMUST00000218378 1279 ntBASIC19.03■□□□□ 0.64
Trub1Q8C0D0 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trub1Q8C0D0 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
Trub1Q8C0D0 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Trub1Q8C0D0 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trub1Q8C0D0 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trub1Q8C0D0 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trub1Q8C0D0 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trub1Q8C0D0 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trub1Q8C0D0 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
Trub1Q8C0D0 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Trub1Q8C0D0 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Trub1Q8C0D0 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trub1Q8C0D0 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trub1Q8C0D0 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC19.02■□□□□ 0.64
Trub1Q8C0D0 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Trub1Q8C0D0 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Trub1Q8C0D0 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.63
Trub1Q8C0D0 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC19.02■□□□□ 0.63
Trub1Q8C0D0 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trub1Q8C0D0 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trub1Q8C0D0 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trub1Q8C0D0 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trub1Q8C0D0 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trub1Q8C0D0 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
Trub1Q8C0D0 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC19.01■□□□□ 0.63
Trub1Q8C0D0 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC19.01■□□□□ 0.63
Trub1Q8C0D0 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trub1Q8C0D0 Fam105a-203ENSMUST00000226170 3043 ntBASIC19.01■□□□□ 0.63
Trub1Q8C0D0 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trub1Q8C0D0 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trub1Q8C0D0 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trub1Q8C0D0 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trub1Q8C0D0 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trub1Q8C0D0 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trub1Q8C0D0 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trub1Q8C0D0 Gm9194-201ENSMUST00000220749 1447 ntBASIC19■□□□□ 0.63
Trub1Q8C0D0 Gm43672-201ENSMUST00000199072 1731 ntBASIC19■□□□□ 0.63
Trub1Q8C0D0 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC19■□□□□ 0.63
Trub1Q8C0D0 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Trub1Q8C0D0 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC19■□□□□ 0.63
Trub1Q8C0D0 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trub1Q8C0D0 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trub1Q8C0D0 Gm5953-201ENSMUST00000220644 2616 ntBASIC19■□□□□ 0.63
Trub1Q8C0D0 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trub1Q8C0D0 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Trub1Q8C0D0 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trub1Q8C0D0 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trub1Q8C0D0 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC18.99■□□□□ 0.63
Trub1Q8C0D0 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Trub1Q8C0D0 AC123834.2-201ENSMUST00000224038 2340 ntBASIC18.99■□□□□ 0.63
Trub1Q8C0D0 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Trub1Q8C0D0 Gm42569-201ENSMUST00000200539 472 ntBASIC18.99■□□□□ 0.63
Trub1Q8C0D0 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC18.99■□□□□ 0.63
Trub1Q8C0D0 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC18.99■□□□□ 0.63
Trub1Q8C0D0 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trub1Q8C0D0 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trub1Q8C0D0 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trub1Q8C0D0 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
Trub1Q8C0D0 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Trub1Q8C0D0 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC18.99■□□□□ 0.63
Trub1Q8C0D0 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Trub1Q8C0D0 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Trub1Q8C0D0 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trub1Q8C0D0 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Trub1Q8C0D0 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trub1Q8C0D0 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trub1Q8C0D0 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trub1Q8C0D0 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trub1Q8C0D0 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC18.98■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 45.4 ms