Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col7a1Q63870 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col7a1Q63870 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col7a1Q63870 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col7a1Q63870 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col7a1Q63870 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC15.49■□□□□ 0.07
Col7a1Q63870 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC15.49■□□□□ 0.07
Col7a1Q63870 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
Col7a1Q63870 Gm37035-201ENSMUST00000194809 2148 ntBASIC15.49■□□□□ 0.07
Col7a1Q63870 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col7a1Q63870 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC15.49■□□□□ 0.07
Col7a1Q63870 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Col7a1Q63870 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col7a1Q63870 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Col7a1Q63870 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC15.49■□□□□ 0.07
Col7a1Q63870 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC15.49■□□□□ 0.07
Col7a1Q63870 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Col7a1Q63870 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col7a1Q63870 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col7a1Q63870 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col7a1Q63870 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC15.49■□□□□ 0.07
Col7a1Q63870 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Col7a1Q63870 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col7a1Q63870 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Col7a1Q63870 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC15.48■□□□□ 0.07
Col7a1Q63870 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col7a1Q63870 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col7a1Q63870 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col7a1Q63870 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC15.48■□□□□ 0.07
Col7a1Q63870 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Col7a1Q63870 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col7a1Q63870 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC15.48■□□□□ 0.07
Col7a1Q63870 Gm27357-201ENSMUST00000183754 135 ntBASIC15.48■□□□□ 0.07
Col7a1Q63870 Gm43353-201ENSMUST00000199224 1295 ntBASIC15.48■□□□□ 0.07
Col7a1Q63870 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
Col7a1Q63870 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col7a1Q63870 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC15.48■□□□□ 0.07
Col7a1Q63870 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC15.48■□□□□ 0.07
Col7a1Q63870 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col7a1Q63870 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Col7a1Q63870 Gm7791-201ENSMUST00000219066 539 ntBASIC15.47■□□□□ 0.07
Col7a1Q63870 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col7a1Q63870 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col7a1Q63870 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col7a1Q63870 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
Col7a1Q63870 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Col7a1Q63870 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col7a1Q63870 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Col7a1Q63870 Gm18733-201ENSMUST00000173950 856 ntBASIC15.47■□□□□ 0.07
Col7a1Q63870 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC15.47■□□□□ 0.07
Col7a1Q63870 Gm2274-201ENSMUST00000184539 609 ntBASIC15.47■□□□□ 0.07
Col7a1Q63870 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC15.47■□□□□ 0.07
Col7a1Q63870 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col7a1Q63870 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col7a1Q63870 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col7a1Q63870 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC15.47■□□□□ 0.07
Col7a1Q63870 Gm9013-201ENSMUST00000132939 882 ntBASIC15.47■□□□□ 0.07
Col7a1Q63870 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col7a1Q63870 Zfp783-201ENSMUST00000095946 670 ntBASIC15.47■□□□□ 0.07
Col7a1Q63870 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col7a1Q63870 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Col7a1Q63870 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Col7a1Q63870 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col7a1Q63870 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Col7a1Q63870 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col7a1Q63870 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col7a1Q63870 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Col7a1Q63870 Mir8098-201ENSMUST00000184011 137 ntBASIC15.46■□□□□ 0.07
Col7a1Q63870 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC15.46■□□□□ 0.07
Col7a1Q63870 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
Col7a1Q63870 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Col7a1Q63870 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col7a1Q63870 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Col7a1Q63870 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col7a1Q63870 Gm12085-201ENSMUST00000119263 940 ntBASIC15.46■□□□□ 0.06
Col7a1Q63870 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
Col7a1Q63870 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
Col7a1Q63870 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC15.46■□□□□ 0.06
Col7a1Q63870 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC15.46■□□□□ 0.06
Col7a1Q63870 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
Col7a1Q63870 Gm19094-201ENSMUST00000209791 1246 ntBASIC15.46■□□□□ 0.06
Col7a1Q63870 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
Col7a1Q63870 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.06
Col7a1Q63870 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC15.46■□□□□ 0.06
Col7a1Q63870 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC15.46■□□□□ 0.06
Col7a1Q63870 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col7a1Q63870 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col7a1Q63870 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col7a1Q63870 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col7a1Q63870 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Col7a1Q63870 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col7a1Q63870 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col7a1Q63870 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC15.45■□□□□ 0.06
Col7a1Q63870 Otx2os1-206ENSMUST00000228153 787 ntBASIC15.45■□□□□ 0.06
Col7a1Q63870 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col7a1Q63870 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Col7a1Q63870 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col7a1Q63870 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col7a1Q63870 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Col7a1Q63870 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms