Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CtcfQ61164 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CtcfQ61164 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CtcfQ61164 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC20.24■□□□□ 0.83
CtcfQ61164 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
CtcfQ61164 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CtcfQ61164 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CtcfQ61164 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
CtcfQ61164 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CtcfQ61164 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CtcfQ61164 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
CtcfQ61164 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC20.24■□□□□ 0.83
CtcfQ61164 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CtcfQ61164 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CtcfQ61164 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CtcfQ61164 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CtcfQ61164 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC20.24■□□□□ 0.83
CtcfQ61164 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CtcfQ61164 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CtcfQ61164 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CtcfQ61164 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CtcfQ61164 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CtcfQ61164 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
CtcfQ61164 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CtcfQ61164 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CtcfQ61164 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CtcfQ61164 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CtcfQ61164 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CtcfQ61164 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC20.23■□□□□ 0.83
CtcfQ61164 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC20.23■□□□□ 0.83
CtcfQ61164 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CtcfQ61164 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CtcfQ61164 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CtcfQ61164 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
CtcfQ61164 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
CtcfQ61164 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CtcfQ61164 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC20.23■□□□□ 0.83
CtcfQ61164 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CtcfQ61164 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CtcfQ61164 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CtcfQ61164 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CtcfQ61164 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CtcfQ61164 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CtcfQ61164 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CtcfQ61164 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CtcfQ61164 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC20.22■□□□□ 0.83
CtcfQ61164 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CtcfQ61164 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CtcfQ61164 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CtcfQ61164 Gm10167-201ENSMUST00000150411 1479 ntBASIC20.22■□□□□ 0.83
CtcfQ61164 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CtcfQ61164 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CtcfQ61164 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CtcfQ61164 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC20.22■□□□□ 0.83
CtcfQ61164 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CtcfQ61164 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CtcfQ61164 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CtcfQ61164 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CtcfQ61164 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CtcfQ61164 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CtcfQ61164 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC20.21■□□□□ 0.83
CtcfQ61164 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CtcfQ61164 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CtcfQ61164 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CtcfQ61164 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CtcfQ61164 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CtcfQ61164 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CtcfQ61164 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC20.2■□□□□ 0.82
CtcfQ61164 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CtcfQ61164 Gm26971-201ENSMUST00000182423 1072 ntBASIC20.2■□□□□ 0.82
CtcfQ61164 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CtcfQ61164 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CtcfQ61164 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CtcfQ61164 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CtcfQ61164 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CtcfQ61164 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CtcfQ61164 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC20.2■□□□□ 0.82
CtcfQ61164 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CtcfQ61164 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CtcfQ61164 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CtcfQ61164 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CtcfQ61164 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CtcfQ61164 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CtcfQ61164 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CtcfQ61164 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
CtcfQ61164 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC20.19■□□□□ 0.82
CtcfQ61164 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC20.19■□□□□ 0.82
CtcfQ61164 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC20.19■□□□□ 0.82
CtcfQ61164 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
CtcfQ61164 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CtcfQ61164 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CtcfQ61164 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
CtcfQ61164 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CtcfQ61164 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC20.18■□□□□ 0.82
CtcfQ61164 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
CtcfQ61164 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC20.18■□□□□ 0.82
CtcfQ61164 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CtcfQ61164 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CtcfQ61164 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC20.18■□□□□ 0.82
CtcfQ61164 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC20.18■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 13.2 ms