Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Ddb1Q3U1J4 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC23.62■■□□□ 1.37
Ddb1Q3U1J4 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
Ddb1Q3U1J4 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
Ddb1Q3U1J4 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC23.62■■□□□ 1.37
Ddb1Q3U1J4 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Ddb1Q3U1J4 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Ddb1Q3U1J4 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Ddb1Q3U1J4 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC23.61■■□□□ 1.37
Ddb1Q3U1J4 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
Ddb1Q3U1J4 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
Ddb1Q3U1J4 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC23.61■■□□□ 1.37
Ddb1Q3U1J4 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Ddb1Q3U1J4 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Ddb1Q3U1J4 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Ddb1Q3U1J4 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
Ddb1Q3U1J4 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Ddb1Q3U1J4 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
Ddb1Q3U1J4 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
Ddb1Q3U1J4 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC23.61■■□□□ 1.37
Ddb1Q3U1J4 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Ddb1Q3U1J4 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Ddb1Q3U1J4 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Ddb1Q3U1J4 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Ddb1Q3U1J4 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Ddb1Q3U1J4 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Ddb1Q3U1J4 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.37
Ddb1Q3U1J4 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
Ddb1Q3U1J4 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
Ddb1Q3U1J4 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
Ddb1Q3U1J4 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC23.6■■□□□ 1.37
Ddb1Q3U1J4 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Ddb1Q3U1J4 Mir6349-201ENSMUST00000184059 97 ntBASIC23.6■■□□□ 1.37
Ddb1Q3U1J4 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC23.6■■□□□ 1.37
Ddb1Q3U1J4 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC23.6■■□□□ 1.37
Ddb1Q3U1J4 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Ddb1Q3U1J4 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC23.6■■□□□ 1.37
Ddb1Q3U1J4 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Ddb1Q3U1J4 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
Ddb1Q3U1J4 Gm45058-201ENSMUST00000205810 766 ntBASIC23.59■■□□□ 1.37
Ddb1Q3U1J4 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
Ddb1Q3U1J4 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Ddb1Q3U1J4 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
Ddb1Q3U1J4 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Ddb1Q3U1J4 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
Ddb1Q3U1J4 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC23.59■■□□□ 1.37
Ddb1Q3U1J4 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
Ddb1Q3U1J4 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
Ddb1Q3U1J4 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Ddb1Q3U1J4 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Ddb1Q3U1J4 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
Ddb1Q3U1J4 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Ddb1Q3U1J4 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
Ddb1Q3U1J4 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC23.57■■□□□ 1.36
Ddb1Q3U1J4 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
Ddb1Q3U1J4 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Ddb1Q3U1J4 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Ddb1Q3U1J4 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Ddb1Q3U1J4 AC166341.7-201ENSMUST00000221698 126 ntBASIC23.57■■□□□ 1.36
Ddb1Q3U1J4 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Ddb1Q3U1J4 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC23.57■■□□□ 1.36
Ddb1Q3U1J4 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Ddb1Q3U1J4 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
Ddb1Q3U1J4 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
Ddb1Q3U1J4 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC23.57■■□□□ 1.36
Ddb1Q3U1J4 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
Ddb1Q3U1J4 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC23.56■■□□□ 1.36
Ddb1Q3U1J4 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Ddb1Q3U1J4 Gm9103-201ENSMUST00000119371 405 ntBASIC23.56■■□□□ 1.36
Ddb1Q3U1J4 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
Ddb1Q3U1J4 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC23.56■■□□□ 1.36
Ddb1Q3U1J4 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
Ddb1Q3U1J4 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Ddb1Q3U1J4 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC23.56■■□□□ 1.36
Ddb1Q3U1J4 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Ddb1Q3U1J4 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
Ddb1Q3U1J4 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
Ddb1Q3U1J4 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.36
Ddb1Q3U1J4 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Ddb1Q3U1J4 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
Ddb1Q3U1J4 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Ddb1Q3U1J4 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Ddb1Q3U1J4 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Ddb1Q3U1J4 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Ddb1Q3U1J4 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Ddb1Q3U1J4 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Ddb1Q3U1J4 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC23.54■■□□□ 1.36
Ddb1Q3U1J4 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC23.54■■□□□ 1.36
Ddb1Q3U1J4 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
Ddb1Q3U1J4 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Ddb1Q3U1J4 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC23.54■■□□□ 1.36
Ddb1Q3U1J4 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC23.54■■□□□ 1.36
Ddb1Q3U1J4 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Ddb1Q3U1J4 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC23.53■■□□□ 1.36
Ddb1Q3U1J4 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Ddb1Q3U1J4 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
Ddb1Q3U1J4 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
Ddb1Q3U1J4 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Ddb1Q3U1J4 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
Ddb1Q3U1J4 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC23.53■■□□□ 1.36
Retrieved 100 of 76,532 protein–RNA pairs in 17.2 ms