Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Ptchd3Q0EEE2 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ptchd3Q0EEE2 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Ptchd3Q0EEE2 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ptchd3Q0EEE2 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Ptchd3Q0EEE2 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ptchd3Q0EEE2 AC165080.2-201ENSMUST00000217491 1530 ntBASIC17.81■□□□□ 0.44
Ptchd3Q0EEE2 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Ptchd3Q0EEE2 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ptchd3Q0EEE2 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ptchd3Q0EEE2 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ptchd3Q0EEE2 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ptchd3Q0EEE2 Gm43702-201ENSMUST00000198772 2546 ntBASIC17.8■□□□□ 0.44
Ptchd3Q0EEE2 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Ptchd3Q0EEE2 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ptchd3Q0EEE2 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Ptchd3Q0EEE2 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC17.8■□□□□ 0.44
Ptchd3Q0EEE2 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Ptchd3Q0EEE2 Gm19439-201ENSMUST00000198195 2273 ntBASIC17.8■□□□□ 0.44
Ptchd3Q0EEE2 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ptchd3Q0EEE2 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC17.8■□□□□ 0.44
Ptchd3Q0EEE2 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ptchd3Q0EEE2 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ptchd3Q0EEE2 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Ptchd3Q0EEE2 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ptchd3Q0EEE2 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC17.79■□□□□ 0.44
Ptchd3Q0EEE2 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ptchd3Q0EEE2 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Ptchd3Q0EEE2 Gm43173-201ENSMUST00000202246 593 ntBASIC17.79■□□□□ 0.44
Ptchd3Q0EEE2 Gm6139-201ENSMUST00000079261 882 ntBASIC17.79■□□□□ 0.44
Ptchd3Q0EEE2 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Ptchd3Q0EEE2 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ptchd3Q0EEE2 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Ptchd3Q0EEE2 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ptchd3Q0EEE2 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ptchd3Q0EEE2 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ptchd3Q0EEE2 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
Ptchd3Q0EEE2 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Ptchd3Q0EEE2 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Ptchd3Q0EEE2 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ptchd3Q0EEE2 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ptchd3Q0EEE2 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC17.78■□□□□ 0.44
Ptchd3Q0EEE2 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC17.78■□□□□ 0.44
Ptchd3Q0EEE2 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC17.78■□□□□ 0.44
Ptchd3Q0EEE2 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ptchd3Q0EEE2 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ptchd3Q0EEE2 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ptchd3Q0EEE2 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ptchd3Q0EEE2 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ptchd3Q0EEE2 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Ptchd3Q0EEE2 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ptchd3Q0EEE2 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Ptchd3Q0EEE2 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC17.77■□□□□ 0.44
Ptchd3Q0EEE2 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ptchd3Q0EEE2 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ptchd3Q0EEE2 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Ptchd3Q0EEE2 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Ptchd3Q0EEE2 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Ptchd3Q0EEE2 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ptchd3Q0EEE2 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ptchd3Q0EEE2 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ptchd3Q0EEE2 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ptchd3Q0EEE2 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Ptchd3Q0EEE2 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Ptchd3Q0EEE2 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Ptchd3Q0EEE2 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ptchd3Q0EEE2 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ptchd3Q0EEE2 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ptchd3Q0EEE2 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ptchd3Q0EEE2 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ptchd3Q0EEE2 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ptchd3Q0EEE2 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ptchd3Q0EEE2 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ptchd3Q0EEE2 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ptchd3Q0EEE2 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ptchd3Q0EEE2 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ptchd3Q0EEE2 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ptchd3Q0EEE2 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Ptchd3Q0EEE2 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC17.76■□□□□ 0.43
Ptchd3Q0EEE2 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Ptchd3Q0EEE2 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ptchd3Q0EEE2 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ptchd3Q0EEE2 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ptchd3Q0EEE2 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ptchd3Q0EEE2 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ptchd3Q0EEE2 Smad6-203ENSMUST00000179458 273 ntBASIC17.75■□□□□ 0.43
Ptchd3Q0EEE2 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ptchd3Q0EEE2 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ptchd3Q0EEE2 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ptchd3Q0EEE2 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ptchd3Q0EEE2 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ptchd3Q0EEE2 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ptchd3Q0EEE2 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC17.74■□□□□ 0.43
Ptchd3Q0EEE2 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC17.74■□□□□ 0.43
Ptchd3Q0EEE2 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Ptchd3Q0EEE2 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ptchd3Q0EEE2 Gm43213-201ENSMUST00000151866 1790 ntBASIC17.74■□□□□ 0.43
Ptchd3Q0EEE2 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Ptchd3Q0EEE2 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
Ptchd3Q0EEE2 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC17.74■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 18.8 ms