Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Cdx2P43241 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Cdx2P43241 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Cdx2P43241 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Cdx2P43241 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Cdx2P43241 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Cdx2P43241 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Cdx2P43241 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Cdx2P43241 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Cdx2P43241 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Cdx2P43241 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Cdx2P43241 Gm10138-203ENSMUST00000206952 366 ntBASIC17.6■□□□□ 0.41
Cdx2P43241 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Cdx2P43241 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC17.6■□□□□ 0.41
Cdx2P43241 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Cdx2P43241 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Cdx2P43241 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Cdx2P43241 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC17.6■□□□□ 0.41
Cdx2P43241 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Cdx2P43241 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Cdx2P43241 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
Cdx2P43241 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Cdx2P43241 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Cdx2P43241 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Cdx2P43241 Gm43006-201ENSMUST00000197702 1602 ntBASIC17.59■□□□□ 0.41
Cdx2P43241 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Cdx2P43241 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Cdx2P43241 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Cdx2P43241 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Cdx2P43241 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Cdx2P43241 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Cdx2P43241 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Cdx2P43241 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Cdx2P43241 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Cdx2P43241 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Cdx2P43241 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Cdx2P43241 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Cdx2P43241 AC124581.1-201ENSMUST00000225416 1399 ntBASIC17.58■□□□□ 0.4
Cdx2P43241 Arhgef4-208ENSMUST00000211073 171 ntBASIC17.58■□□□□ 0.4
Cdx2P43241 Gm30025-201ENSMUST00000218555 728 ntBASIC17.58■□□□□ 0.4
Cdx2P43241 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Cdx2P43241 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Cdx2P43241 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Cdx2P43241 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC17.58■□□□□ 0.4
Cdx2P43241 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdx2P43241 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdx2P43241 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Cdx2P43241 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdx2P43241 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdx2P43241 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Cdx2P43241 AC126028.2-201ENSMUST00000228100 1833 ntBASIC17.57■□□□□ 0.4
Cdx2P43241 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC17.57■□□□□ 0.4
Cdx2P43241 Gm42545-201ENSMUST00000202755 922 ntBASIC17.57■□□□□ 0.4
Cdx2P43241 Gm21814-202ENSMUST00000203277 873 ntBASIC17.57■□□□□ 0.4
Cdx2P43241 Gm16042-201ENSMUST00000204813 1247 ntBASIC17.57■□□□□ 0.4
Cdx2P43241 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdx2P43241 Gm18025-201ENSMUST00000221733 862 ntBASIC17.57■□□□□ 0.4
Cdx2P43241 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdx2P43241 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdx2P43241 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Cdx2P43241 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Cdx2P43241 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdx2P43241 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Cdx2P43241 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Cdx2P43241 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdx2P43241 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Cdx2P43241 Gm15375-201ENSMUST00000119510 849 ntBASIC17.56■□□□□ 0.4
Cdx2P43241 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Cdx2P43241 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC17.56■□□□□ 0.4
Cdx2P43241 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdx2P43241 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdx2P43241 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Cdx2P43241 Gm45560-201ENSMUST00000211492 1472 ntBASIC17.56■□□□□ 0.4
Cdx2P43241 Gm8668-201ENSMUST00000120559 1447 ntBASIC17.55■□□□□ 0.4
Cdx2P43241 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdx2P43241 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdx2P43241 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Cdx2P43241 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdx2P43241 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC17.55■□□□□ 0.4
Cdx2P43241 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC17.55■□□□□ 0.4
Cdx2P43241 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC17.55■□□□□ 0.4
Cdx2P43241 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdx2P43241 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdx2P43241 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Cdx2P43241 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdx2P43241 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdx2P43241 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdx2P43241 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdx2P43241 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Cdx2P43241 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC17.54■□□□□ 0.4
Cdx2P43241 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdx2P43241 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdx2P43241 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdx2P43241 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
Cdx2P43241 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC17.54■□□□□ 0.4
Cdx2P43241 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Cdx2P43241 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC17.54■□□□□ 0.4
Cdx2P43241 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
Cdx2P43241 AC156016.1-201ENSMUST00000227190 1035 ntBASIC17.54■□□□□ 0.4
Cdx2P43241 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC17.54■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms