Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC14.32□□□□□ -0.12
Hoxd3P09027 Gm12527-201ENSMUST00000117967 564 ntBASIC14.32□□□□□ -0.12
Hoxd3P09027 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC14.32□□□□□ -0.12
Hoxd3P09027 Gm20049-201ENSMUST00000219950 730 ntBASIC14.32□□□□□ -0.12
Hoxd3P09027 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Hoxd3P09027 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Hoxd3P09027 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Hoxd3P09027 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Hoxd3P09027 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Hoxd3P09027 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Hoxd3P09027 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Hoxd3P09027 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Hoxd3P09027 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Hoxd3P09027 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Hoxd3P09027 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Hoxd3P09027 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Hoxd3P09027 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC14.32□□□□□ -0.12
Hoxd3P09027 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
Hoxd3P09027 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Hoxd3P09027 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Hoxd3P09027 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Hoxd3P09027 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Hoxd3P09027 AC126028.2-201ENSMUST00000228100 1833 ntBASIC14.31□□□□□ -0.12
Hoxd3P09027 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC14.31□□□□□ -0.12
Hoxd3P09027 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Hoxd3P09027 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hoxd3P09027 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hoxd3P09027 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC14.31□□□□□ -0.12
Hoxd3P09027 Gm20760-201ENSMUST00000179197 648 ntBASIC14.31□□□□□ -0.12
Hoxd3P09027 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC14.31□□□□□ -0.12
Hoxd3P09027 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Hoxd3P09027 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hoxd3P09027 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hoxd3P09027 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Hoxd3P09027 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hoxd3P09027 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hoxd3P09027 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Hoxd3P09027 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC14.31□□□□□ -0.12
Hoxd3P09027 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Hoxd3P09027 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hoxd3P09027 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hoxd3P09027 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hoxd3P09027 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hoxd3P09027 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hoxd3P09027 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hoxd3P09027 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hoxd3P09027 AC122335.2-201ENSMUST00000213901 6181 ntBASIC14.3□□□□□ -0.12
Hoxd3P09027 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Hoxd3P09027 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC14.3□□□□□ -0.12
Hoxd3P09027 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hoxd3P09027 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Hoxd3P09027 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Hoxd3P09027 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC14.3□□□□□ -0.12
Hoxd3P09027 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Hoxd3P09027 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
Hoxd3P09027 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC14.3□□□□□ -0.12
Hoxd3P09027 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Hoxd3P09027 AC124603.1-201ENSMUST00000223843 308 ntBASIC14.3□□□□□ -0.12
Hoxd3P09027 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hoxd3P09027 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hoxd3P09027 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hoxd3P09027 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hoxd3P09027 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hoxd3P09027 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hoxd3P09027 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Hoxd3P09027 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hoxd3P09027 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hoxd3P09027 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC14.29□□□□□ -0.12
Hoxd3P09027 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hoxd3P09027 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hoxd3P09027 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Hoxd3P09027 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hoxd3P09027 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Hoxd3P09027 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Hoxd3P09027 Gm43672-201ENSMUST00000199072 1731 ntBASIC14.29□□□□□ -0.12
Hoxd3P09027 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hoxd3P09027 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hoxd3P09027 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Hoxd3P09027 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Hoxd3P09027 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC14.29□□□□□ -0.12
Hoxd3P09027 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hoxd3P09027 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hoxd3P09027 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hoxd3P09027 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Hoxd3P09027 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Hoxd3P09027 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hoxd3P09027 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC14.28□□□□□ -0.12
Hoxd3P09027 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hoxd3P09027 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hoxd3P09027 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC14.28□□□□□ -0.12
Hoxd3P09027 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hoxd3P09027 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hoxd3P09027 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Hoxd3P09027 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Hoxd3P09027 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Hoxd3P09027 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Hoxd3P09027 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Hoxd3P09027 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Hoxd3P09027 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Hoxd3P09027 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 38.9 ms