Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Hipk2-205ENSMUST00000160962 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC8.69□□□□□ -1.02
Traf1P39428 Gm37520-201ENSMUST00000194883 2672 ntBASIC8.69□□□□□ -1.02
Traf1P39428 Olfr43-202ENSMUST00000205664 2018 ntAPPRIS P1 TSL 3 BASIC8.69□□□□□ -1.02
Traf1P39428 Pcdh15-208ENSMUST00000125006 4863 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
Traf1P39428 Pcdh15-232ENSMUST00000177420 4878 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
Traf1P39428 Pde4b-204ENSMUST00000106901 2129 ntTSL 2 BASIC8.69□□□□□ -1.02
Traf1P39428 Gm13106-201ENSMUST00000119045 1443 ntBASIC8.69□□□□□ -1.02
Traf1P39428 Gm37234-201ENSMUST00000193259 1441 ntBASIC8.69□□□□□ -1.02
Traf1P39428 Slc38a6-202ENSMUST00000101313 1546 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
Traf1P39428 Gm18701-201ENSMUST00000188281 1536 ntBASIC8.69□□□□□ -1.02
Traf1P39428 Xlr3a-202ENSMUST00000114524 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC8.69□□□□□ -1.02
Traf1P39428 Sox5-201ENSMUST00000038815 7243 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
Traf1P39428 Cebpz-201ENSMUST00000024885 4074 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
Traf1P39428 Cd69-201ENSMUST00000032259 1687 ntAPPRIS P2 TSL 1 (best) BASIC8.69□□□□□ -1.02
Traf1P39428 Ube4a-204ENSMUST00000138559 3374 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
Traf1P39428 Musk-208ENSMUST00000179951 3376 ntTSL 5 BASIC8.69□□□□□ -1.02
Traf1P39428 Gm26545-201ENSMUST00000181082 1746 ntTSL 5 BASIC8.68□□□□□ -1.02
Traf1P39428 Samd3-206ENSMUST00000220219 1744 ntAPPRIS P4 TSL 5 BASIC8.68□□□□□ -1.02
Traf1P39428 Cdkal1-201ENSMUST00000006353 2629 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Traf1P39428 Grik1-210ENSMUST00000228034 2708 ntBASIC8.68□□□□□ -1.02
Traf1P39428 Gm10650-202ENSMUST00000196581 1969 ntBASIC8.68□□□□□ -1.02
Traf1P39428 Gm6567-201ENSMUST00000205529 2095 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Traf1P39428 Fshr-201ENSMUST00000035701 2079 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Traf1P39428 Gimap6-202ENSMUST00000119315 3179 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Traf1P39428 Gm37372-201ENSMUST00000193577 3311 ntBASIC8.68□□□□□ -1.02
Traf1P39428 Olfr54-203ENSMUST00000217480 5048 ntAPPRIS P1 TSL 5 BASIC8.68□□□□□ -1.02
Traf1P39428 Gm34777-201ENSMUST00000219688 2505 ntTSL 5 BASIC8.68□□□□□ -1.02
Traf1P39428 Gm15362-201ENSMUST00000121459 388 ntBASIC8.68□□□□□ -1.02
Traf1P39428 Gm11188-201ENSMUST00000122382 388 ntBASIC8.68□□□□□ -1.02
Traf1P39428 Gm14155-201ENSMUST00000127230 587 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Traf1P39428 Trav8-2-201ENSMUST00000130122 337 ntBASIC8.68□□□□□ -1.02
Traf1P39428 Gm25180-201ENSMUST00000157746 115 ntBASIC8.68□□□□□ -1.02
Traf1P39428 Mgst2-206ENSMUST00000161590 481 ntTSL 3 BASIC8.68□□□□□ -1.02
Traf1P39428 Gm26784-201ENSMUST00000181666 410 ntBASIC8.68□□□□□ -1.02
Traf1P39428 4930471M09Rik-201ENSMUST00000181849 1112 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Traf1P39428 Ly6e-208ENSMUST00000188042 714 ntAPPRIS P1 TSL 3 BASIC8.68□□□□□ -1.02
Traf1P39428 Ly6g-202ENSMUST00000190262 941 ntAPPRIS P1 TSL 5 BASIC8.68□□□□□ -1.02
Traf1P39428 Gm37871-201ENSMUST00000194973 688 ntBASIC8.68□□□□□ -1.02
Traf1P39428 Gm36932-201ENSMUST00000195226 929 ntBASIC8.68□□□□□ -1.02
Traf1P39428 Gm22711-202ENSMUST00000197029 135 ntBASIC8.68□□□□□ -1.02
Traf1P39428 Gm45198-201ENSMUST00000206796 591 ntBASIC8.68□□□□□ -1.02
Traf1P39428 5830408C22Rik-203ENSMUST00000210596 326 ntTSL 3 BASIC8.68□□□□□ -1.02
Traf1P39428 AC154382.1-201ENSMUST00000220958 1282 ntBASIC8.68□□□□□ -1.02
Traf1P39428 AC154361.1-201ENSMUST00000225694 745 ntBASIC8.68□□□□□ -1.02
Traf1P39428 Klrk1-201ENSMUST00000032252 1270 ntAPPRIS P4 TSL 1 (best) BASIC8.68□□□□□ -1.02
Traf1P39428 Gm11758-202ENSMUST00000107327 1325 ntAPPRIS P2 TSL 1 (best) BASIC8.68□□□□□ -1.02
Traf1P39428 Fetub-202ENSMUST00000116625 1338 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Traf1P39428 Cd36-203ENSMUST00000169095 2677 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Traf1P39428 Tmem232-201ENSMUST00000062161 2665 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Traf1P39428 Dst-209ENSMUST00000182697 2704 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Traf1P39428 Arpp21-210ENSMUST00000159451 2805 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Traf1P39428 Pcnx4-201ENSMUST00000044352 4300 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Traf1P39428 4930512H18Rik-201ENSMUST00000133752 1493 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Traf1P39428 Gm18359-201ENSMUST00000173024 1459 ntBASIC8.68□□□□□ -1.02
Traf1P39428 Nrk-202ENSMUST00000113052 8043 ntAPPRIS ALT2 TSL 5 BASIC8.68□□□□□ -1.02
Traf1P39428 Gm18194-202ENSMUST00000210952 3442 ntBASIC8.68□□□□□ -1.02
Traf1P39428 Actr6-201ENSMUST00000020109 1705 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Traf1P39428 Gm28068-201ENSMUST00000190861 3503 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Traf1P39428 Zfp317-201ENSMUST00000079042 1824 ntAPPRIS P1 TSL 2 BASIC8.68□□□□□ -1.02
Traf1P39428 Gm43873-201ENSMUST00000204505 3938 ntBASIC8.68□□□□□ -1.02
Traf1P39428 Sox6-202ENSMUST00000106612 8193 ntAPPRIS ALT2 TSL 1 (best) BASIC8.68□□□□□ -1.02
Traf1P39428 Olfr45-202ENSMUST00000214637 6157 ntAPPRIS P1 TSL 3 BASIC8.68□□□□□ -1.02
Traf1P39428 Slc24a2-202ENSMUST00000107155 2171 ntTSL 5 BASIC8.68□□□□□ -1.02
Traf1P39428 Ankfn1-203ENSMUST00000169201 2232 ntTSL 2 BASIC8.68□□□□□ -1.02
Traf1P39428 Abcc1-201ENSMUST00000100167 6792 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Traf1P39428 Pfkfb3-206ENSMUST00000114846 4634 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Traf1P39428 Ank3-239ENSMUST00000183148 7404 ntAPPRIS ALT2 TSL 5 BASIC8.68□□□□□ -1.02
Traf1P39428 Ankef1-202ENSMUST00000121717 2875 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
Traf1P39428 Gm43606-201ENSMUST00000195938 3556 ntBASIC8.67□□□□□ -1.02
Traf1P39428 Muc5ac-202ENSMUST00000155534 10752 ntAPPRIS ALT2 TSL 5 BASIC8.67□□□□□ -1.02
Traf1P39428 Stra6l-203ENSMUST00000107783 3669 ntAPPRIS P3 TSL 5 BASIC8.67□□□□□ -1.02
Traf1P39428 Gm25757-201ENSMUST00000103986 123 ntBASIC8.67□□□□□ -1.02
Traf1P39428 Ola1-203ENSMUST00000112055 1251 ntTSL 5 BASIC8.67□□□□□ -1.02
Traf1P39428 Gm15778-201ENSMUST00000118469 608 ntBASIC8.67□□□□□ -1.02
Traf1P39428 Gm12959-201ENSMUST00000119396 403 ntBASIC8.67□□□□□ -1.02
Traf1P39428 Gm12331-201ENSMUST00000119927 622 ntBASIC8.67□□□□□ -1.02
Traf1P39428 Gm12593-201ENSMUST00000120981 743 ntBASIC8.67□□□□□ -1.02
Traf1P39428 Cbx5-203ENSMUST00000122182 1146 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
Traf1P39428 Gm4887-201ENSMUST00000122230 1053 ntBASIC8.67□□□□□ -1.02
Traf1P39428 Gm22025-201ENSMUST00000122734 302 ntBASIC8.67□□□□□ -1.02
Traf1P39428 Cox7c-204ENSMUST00000132233 709 ntTSL 2 BASIC8.67□□□□□ -1.02
Traf1P39428 Ddx18-201ENSMUST00000001724 2258 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
Traf1P39428 Gm27373-201ENSMUST00000184017 184 ntBASIC8.67□□□□□ -1.02
Traf1P39428 Gm29496-201ENSMUST00000189854 693 ntBASIC8.67□□□□□ -1.02
Traf1P39428 Gm29477-201ENSMUST00000189860 499 ntTSL 5 BASIC8.67□□□□□ -1.02
Traf1P39428 Gm21292-202ENSMUST00000190329 1225 ntAPPRIS P1 TSL 5 BASIC8.67□□□□□ -1.02
Traf1P39428 Gm38315-201ENSMUST00000194286 2437 ntBASIC8.67□□□□□ -1.02
Traf1P39428 Gm36933-201ENSMUST00000194945 3071 ntBASIC8.67□□□□□ -1.02
Traf1P39428 D13Ertd608e-202ENSMUST00000195797 704 ntAPPRIS P5 TSL 1 (best) BASIC8.67□□□□□ -1.02
Traf1P39428 4930584F24Rik-204ENSMUST00000198070 1163 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
Traf1P39428 Gm45805-201ENSMUST00000212695 2066 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
Traf1P39428 AC134859.1-201ENSMUST00000214085 721 ntTSL 3 BASIC8.67□□□□□ -1.02
Traf1P39428 Olfr622-204ENSMUST00000216570 2149 ntAPPRIS P1 TSL 5 BASIC8.67□□□□□ -1.02
Traf1P39428 Grik2-204ENSMUST00000218441 3083 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
Traf1P39428 AC167364.2-201ENSMUST00000221226 1037 ntTSL 5 BASIC8.67□□□□□ -1.02
Traf1P39428 AC133598.2-201ENSMUST00000224302 624 ntBASIC8.67□□□□□ -1.02
Traf1P39428 AC117949.1-201ENSMUST00000225547 419 ntBASIC8.67□□□□□ -1.02
Traf1P39428 Myl12a-201ENSMUST00000024846 980 ntAPPRIS P1 TSL 2 BASIC8.67□□□□□ -1.02
Traf1P39428 Crisp4-201ENSMUST00000026876 1252 ntAPPRIS ALT2 TSL 1 (best) BASIC8.67□□□□□ -1.02
Traf1P39428 Morn5-201ENSMUST00000028256 714 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
Retrieved 100 of 76,532 protein–RNA pairs in 108 ms