Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Wdr72-205ENSMUST00000215440 5160 ntAPPRIS ALT2 TSL 5 BASIC8.85□□□□□ -0.99
Traf1P39428 Zfp85os-201ENSMUST00000049518 2624 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
Traf1P39428 Gm45477-201ENSMUST00000200213 5498 ntBASIC8.85□□□□□ -0.99
Traf1P39428 4930428E07Rik-202ENSMUST00000222922 3799 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
Traf1P39428 AI662270-202ENSMUST00000143673 1428 ntTSL 5 BASIC8.85□□□□□ -0.99
Traf1P39428 Dppa2-201ENSMUST00000097175 1948 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
Traf1P39428 Mtm1-205ENSMUST00000114617 3338 ntAPPRIS P1 TSL 5 BASIC8.85□□□□□ -0.99
Traf1P39428 Mtm1-202ENSMUST00000033700 3316 ntAPPRIS P1 TSL 5 BASIC8.85□□□□□ -0.99
Traf1P39428 Rad51b-203ENSMUST00000218039 2187 ntAPPRIS P1 TSL 5 BASIC8.85□□□□□ -0.99
Traf1P39428 9230112J17Rik-201ENSMUST00000216749 2333 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
Traf1P39428 Arfgef1-203ENSMUST00000131556 3424 ntTSL 5 BASIC8.84□□□□□ -0.99
Traf1P39428 Oxtr-202ENSMUST00000204027 3721 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
Traf1P39428 Gm29555-201ENSMUST00000188620 1497 ntTSL 5 BASIC8.84□□□□□ -0.99
Traf1P39428 Phc3-206ENSMUST00000129817 3019 ntAPPRIS P3 TSL 1 (best) BASIC8.84□□□□□ -0.99
Traf1P39428 Gm42490-201ENSMUST00000198595 2064 ntBASIC8.84□□□□□ -0.99
Traf1P39428 Gm17130-201ENSMUST00000201542 2683 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
Traf1P39428 Eps15-201ENSMUST00000030281 2980 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
Traf1P39428 2900064K03Rik-201ENSMUST00000196567 3113 ntBASIC8.84□□□□□ -0.99
Traf1P39428 Mrpl35-201ENSMUST00000065103 3721 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
Traf1P39428 Gm23701-201ENSMUST00000103893 110 ntBASIC8.84□□□□□ -0.99
Traf1P39428 Gm22927-201ENSMUST00000104268 131 ntBASIC8.84□□□□□ -0.99
Traf1P39428 1700029I15Rik-202ENSMUST00000111280 416 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
Traf1P39428 Gm17184-201ENSMUST00000111864 462 ntBASIC8.84□□□□□ -0.99
Traf1P39428 Gm11443-201ENSMUST00000118790 479 ntBASIC8.84□□□□□ -0.99
Traf1P39428 Gm9378-201ENSMUST00000120315 471 ntBASIC8.84□□□□□ -0.99
Traf1P39428 Gm15133-201ENSMUST00000139019 843 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
Traf1P39428 4933406G16Rik-201ENSMUST00000144854 1415 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
Traf1P39428 Gm23639-201ENSMUST00000175078 132 ntBASIC8.84□□□□□ -0.99
Traf1P39428 Gm18254-201ENSMUST00000185699 1204 ntBASIC8.84□□□□□ -0.99
Traf1P39428 Gm28164-201ENSMUST00000190143 442 ntBASIC8.84□□□□□ -0.99
Traf1P39428 Frrs1-202ENSMUST00000195905 6823 ntAPPRIS P1 TSL 5 BASIC8.84□□□□□ -0.99
Traf1P39428 Gm45319-201ENSMUST00000210220 318 ntBASIC8.84□□□□□ -0.99
Traf1P39428 4930466K18Rik-201ENSMUST00000219458 906 ntBASIC8.84□□□□□ -0.99
Traf1P39428 Cldn10-202ENSMUST00000071546 1031 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
Traf1P39428 Olfr1504-201ENSMUST00000078282 1085 ntAPPRIS P1 BASIC8.84□□□□□ -0.99
Traf1P39428 Olfr1132-201ENSMUST00000090711 927 ntAPPRIS P1 BASIC8.84□□□□□ -0.99
Traf1P39428 AC159301.1-202ENSMUST00000225860 2133 ntBASIC8.84□□□□□ -0.99
Traf1P39428 P2ry14-201ENSMUST00000065220 1672 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
Traf1P39428 1700031F05Rik-201ENSMUST00000048061 1361 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
Traf1P39428 Gm28515-201ENSMUST00000189823 2530 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
Traf1P39428 Zfa-ps-201ENSMUST00000180526 2231 ntBASIC8.84□□□□□ -0.99
Traf1P39428 Fam216b-201ENSMUST00000066437 2241 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
Traf1P39428 Olfr90-203ENSMUST00000215195 3060 ntAPPRIS P1 TSL 5 BASIC8.84□□□□□ -0.99
Traf1P39428 Luzp1-202ENSMUST00000063021 3775 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -1
Traf1P39428 Slc12a1-203ENSMUST00000110495 4642 ntAPPRIS ALT2 TSL 5 BASIC8.84□□□□□ -1
Traf1P39428 Tctex1d1-202ENSMUST00000116317 1772 ntAPPRIS P3 TSL 5 BASIC8.84□□□□□ -1
Traf1P39428 Zfp60-202ENSMUST00000108336 5896 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
Traf1P39428 Speer4e-201ENSMUST00000159973 1603 ntAPPRIS P1 TSL 5 BASIC8.83□□□□□ -1
Traf1P39428 Adgrl2-212ENSMUST00000198779 4592 ntTSL 5 BASIC8.83□□□□□ -1
Traf1P39428 Ift122-203ENSMUST00000112925 4122 ntAPPRIS ALT2 TSL 1 (best) BASIC8.83□□□□□ -1
Traf1P39428 Ankef1-210ENSMUST00000180246 2726 ntAPPRIS P1 TSL 5 BASIC8.83□□□□□ -1
Traf1P39428 Gm16427-203ENSMUST00000201432 2042 ntAPPRIS P5 TSL 1 (best) BASIC8.83□□□□□ -1
Traf1P39428 Gm44228-201ENSMUST00000204888 2026 ntBASIC8.83□□□□□ -1
Traf1P39428 Fndc3b-204ENSMUST00000195008 6886 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
Traf1P39428 Olfr1254-202ENSMUST00000111523 2650 ntAPPRIS P1 TSL 3 BASIC8.83□□□□□ -1
Traf1P39428 Rubcnl-201ENSMUST00000036072 2651 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
Traf1P39428 Olfr1315-ps1-203ENSMUST00000217078 1559 ntAPPRIS P5 TSL 5 BASIC8.83□□□□□ -1
Traf1P39428 Lilrb4a-203ENSMUST00000219696 1441 ntAPPRIS P5 TSL 1 (best) BASIC8.83□□□□□ -1
Traf1P39428 AC122426.1-201ENSMUST00000214736 2235 ntBASIC8.83□□□□□ -1
Traf1P39428 Lrrc51-206ENSMUST00000106966 821 ntAPPRIS P1 TSL 2 BASIC8.83□□□□□ -1
Traf1P39428 Borcs8-202ENSMUST00000110139 679 ntAPPRIS ALT2 TSL 3 BASIC8.83□□□□□ -1
Traf1P39428 Cypt3-202ENSMUST00000112573 669 ntAPPRIS ALT2 TSL 1 (best) BASIC8.83□□□□□ -1
Traf1P39428 Paqr5-202ENSMUST00000113990 1073 ntTSL 1 (best) BASIC8.83□□□□□ -1
Traf1P39428 Gm15576-201ENSMUST00000117806 583 ntBASIC8.83□□□□□ -1
Traf1P39428 Gm13526-201ENSMUST00000117970 189 ntBASIC8.83□□□□□ -1
Traf1P39428 n-R5s47-201ENSMUST00000122516 119 ntBASIC8.83□□□□□ -1
Traf1P39428 Gm12868-201ENSMUST00000143801 417 ntTSL 3 BASIC8.83□□□□□ -1
Traf1P39428 Gm26505-201ENSMUST00000176208 166 ntBASIC8.83□□□□□ -1
Traf1P39428 Gm21430-201ENSMUST00000182998 998 ntBASIC8.83□□□□□ -1
Traf1P39428 Gm28119-201ENSMUST00000185538 298 ntTSL 5 BASIC8.83□□□□□ -1
Traf1P39428 Arhgap26-218ENSMUST00000187912 312 ntTSL 5 BASIC8.83□□□□□ -1
Traf1P39428 Gm18797-201ENSMUST00000190809 1174 ntBASIC8.83□□□□□ -1
Traf1P39428 Gm5547-203ENSMUST00000200182 683 ntTSL 5 BASIC8.83□□□□□ -1
Traf1P39428 Gm44287-201ENSMUST00000203069 290 ntTSL 3 BASIC8.83□□□□□ -1
Traf1P39428 1700040L08Rik-201ENSMUST00000205011 541 ntTSL 1 (best) BASIC8.83□□□□□ -1
Traf1P39428 BC024386-202ENSMUST00000209496 851 ntTSL 1 (best) BASIC8.83□□□□□ -1
Traf1P39428 Gm8575-201ENSMUST00000210262 521 ntBASIC8.83□□□□□ -1
Traf1P39428 4930550C14Rik-204ENSMUST00000217318 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC8.83□□□□□ -1
Traf1P39428 AC167222.1-201ENSMUST00000219379 660 ntTSL 2 BASIC8.83□□□□□ -1
Traf1P39428 AC123920.1-201ENSMUST00000221449 384 ntBASIC8.83□□□□□ -1
Traf1P39428 AC161877.2-201ENSMUST00000226248 545 ntBASIC8.83□□□□□ -1
Traf1P39428 Gm24613-201ENSMUST00000083266 130 ntBASIC8.83□□□□□ -1
Traf1P39428 Large1-201ENSMUST00000004497 3669 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
Traf1P39428 Rbms3-212ENSMUST00000174868 2164 ntAPPRIS ALT2 TSL 1 (best) BASIC8.83□□□□□ -1
Traf1P39428 Bcas3-204ENSMUST00000108056 2925 ntTSL 1 (best) BASIC8.83□□□□□ -1
Traf1P39428 Pnliprp1-201ENSMUST00000048644 1619 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
Traf1P39428 Musk-203ENSMUST00000098057 3422 ntTSL 1 (best) BASIC8.83□□□□□ -1
Traf1P39428 Gm37706-201ENSMUST00000195379 2765 ntBASIC8.83□□□□□ -1
Traf1P39428 Abca4-201ENSMUST00000013995 7263 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
Traf1P39428 Trim16-201ENSMUST00000055006 3906 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
Traf1P39428 4833407H14Rik-201ENSMUST00000180442 1485 ntTSL 1 (best) BASIC8.83□□□□□ -1
Traf1P39428 Prr15l-204ENSMUST00000107636 3545 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
Traf1P39428 Zfp661-202ENSMUST00000110366 4912 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
Traf1P39428 Kcne3-203ENSMUST00000178946 1323 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
Traf1P39428 4931406B18Rik-203ENSMUST00000163619 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC8.82□□□□□ -1
Traf1P39428 Olfr982-201ENSMUST00000054051 5576 ntAPPRIS P1 BASIC8.82□□□□□ -1
Traf1P39428 Trappc8-201ENSMUST00000025177 5178 ntAPPRIS ALT2 TSL 5 BASIC8.82□□□□□ -1
Traf1P39428 Gm38331-201ENSMUST00000195719 2671 ntBASIC8.82□□□□□ -1
Traf1P39428 Gm16506-201ENSMUST00000165553 1405 ntAPPRIS P1 TSL 5 BASIC8.82□□□□□ -1
Traf1P39428 Mybbp1a-201ENSMUST00000045633 4358 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
Retrieved 100 of 76,532 protein–RNA pairs in 54.5 ms