Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Usp40Q8BWR4 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
Usp40Q8BWR4 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC25.56■■□□□ 1.68
Usp40Q8BWR4 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC25.56■■□□□ 1.68
Usp40Q8BWR4 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Usp40Q8BWR4 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Usp40Q8BWR4 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Usp40Q8BWR4 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC25.55■■□□□ 1.68
Usp40Q8BWR4 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC25.55■■□□□ 1.68
Usp40Q8BWR4 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC25.55■■□□□ 1.68
Usp40Q8BWR4 Alkbh1-212ENSMUST00000185301 408 ntBASIC25.55■■□□□ 1.68
Usp40Q8BWR4 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Usp40Q8BWR4 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Usp40Q8BWR4 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC25.55■■□□□ 1.68
Usp40Q8BWR4 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
Usp40Q8BWR4 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Usp40Q8BWR4 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Usp40Q8BWR4 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Usp40Q8BWR4 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
Usp40Q8BWR4 Mir7071-201ENSMUST00000184847 69 ntBASIC25.54■■□□□ 1.68
Usp40Q8BWR4 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
Usp40Q8BWR4 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC25.54■■□□□ 1.68
Usp40Q8BWR4 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC25.54■■□□□ 1.68
Usp40Q8BWR4 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC25.54■■□□□ 1.68
Usp40Q8BWR4 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
Usp40Q8BWR4 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Usp40Q8BWR4 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC25.54■■□□□ 1.68
Usp40Q8BWR4 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Usp40Q8BWR4 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
Usp40Q8BWR4 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC25.53■■□□□ 1.68
Usp40Q8BWR4 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
Usp40Q8BWR4 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
Usp40Q8BWR4 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC25.53■■□□□ 1.68
Usp40Q8BWR4 Mtag2-201ENSMUST00000058665 714 ntBASIC25.53■■□□□ 1.68
Usp40Q8BWR4 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC25.53■■□□□ 1.68
Usp40Q8BWR4 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC25.53■■□□□ 1.68
Usp40Q8BWR4 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC25.53■■□□□ 1.68
Usp40Q8BWR4 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC25.53■■□□□ 1.68
Usp40Q8BWR4 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
Usp40Q8BWR4 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Usp40Q8BWR4 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
Usp40Q8BWR4 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
Usp40Q8BWR4 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Usp40Q8BWR4 AL672049.1-201ENSMUST00000197943 91 ntBASIC25.52■■□□□ 1.68
Usp40Q8BWR4 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC25.52■■□□□ 1.68
Usp40Q8BWR4 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Usp40Q8BWR4 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Usp40Q8BWR4 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
Usp40Q8BWR4 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Usp40Q8BWR4 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC25.52■■□□□ 1.68
Usp40Q8BWR4 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC25.51■■□□□ 1.68
Usp40Q8BWR4 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Usp40Q8BWR4 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
Usp40Q8BWR4 AC124392.1-201ENSMUST00000225172 5324 ntBASIC25.51■■□□□ 1.67
Usp40Q8BWR4 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Usp40Q8BWR4 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
Usp40Q8BWR4 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC25.51■■□□□ 1.67
Usp40Q8BWR4 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC25.51■■□□□ 1.67
Usp40Q8BWR4 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Usp40Q8BWR4 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Usp40Q8BWR4 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC25.51■■□□□ 1.67
Usp40Q8BWR4 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
Usp40Q8BWR4 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC25.5■■□□□ 1.67
Usp40Q8BWR4 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
Usp40Q8BWR4 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC25.5■■□□□ 1.67
Usp40Q8BWR4 Gm715-201ENSMUST00000117865 831 ntBASIC25.5■■□□□ 1.67
Usp40Q8BWR4 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
Usp40Q8BWR4 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
Usp40Q8BWR4 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC25.5■■□□□ 1.67
Usp40Q8BWR4 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC25.5■■□□□ 1.67
Usp40Q8BWR4 Zfp783-201ENSMUST00000095946 670 ntBASIC25.5■■□□□ 1.67
Usp40Q8BWR4 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
Usp40Q8BWR4 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC25.49■■□□□ 1.67
Usp40Q8BWR4 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
Usp40Q8BWR4 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC25.49■■□□□ 1.67
Usp40Q8BWR4 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC25.49■■□□□ 1.67
Usp40Q8BWR4 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC25.49■■□□□ 1.67
Usp40Q8BWR4 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC25.49■■□□□ 1.67
Usp40Q8BWR4 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Usp40Q8BWR4 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Usp40Q8BWR4 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC25.48■■□□□ 1.67
Usp40Q8BWR4 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
Usp40Q8BWR4 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Usp40Q8BWR4 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
Usp40Q8BWR4 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC25.48■■□□□ 1.67
Usp40Q8BWR4 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC25.48■■□□□ 1.67
Usp40Q8BWR4 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Usp40Q8BWR4 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
Usp40Q8BWR4 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC25.47■■□□□ 1.67
Usp40Q8BWR4 CT010444.2-201ENSMUST00000217877 1629 ntBASIC25.47■■□□□ 1.67
Usp40Q8BWR4 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC25.46■■□□□ 1.67
Usp40Q8BWR4 Mir1199-201ENSMUST00000117015 119 ntBASIC25.46■■□□□ 1.67
Usp40Q8BWR4 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC25.46■■□□□ 1.67
Usp40Q8BWR4 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC25.46■■□□□ 1.67
Usp40Q8BWR4 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC25.46■■□□□ 1.67
Usp40Q8BWR4 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC25.46■■□□□ 1.67
Usp40Q8BWR4 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC25.46■■□□□ 1.67
Usp40Q8BWR4 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Usp40Q8BWR4 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Usp40Q8BWR4 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC25.45■■□□□ 1.66
Retrieved 100 of 76,532 protein–RNA pairs in 39.9 ms