Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ubfd1Q78JW9 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ubfd1Q78JW9 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ubfd1Q78JW9 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC18.04■□□□□ 0.48
Ubfd1Q78JW9 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Ubfd1Q78JW9 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC18.04■□□□□ 0.48
Ubfd1Q78JW9 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Ubfd1Q78JW9 AC140264.2-202ENSMUST00000218746 817 ntBASIC18.04■□□□□ 0.48
Ubfd1Q78JW9 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ubfd1Q78JW9 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
Ubfd1Q78JW9 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Ubfd1Q78JW9 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ubfd1Q78JW9 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ubfd1Q78JW9 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
Ubfd1Q78JW9 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ubfd1Q78JW9 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ubfd1Q78JW9 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ubfd1Q78JW9 Gm18688-201ENSMUST00000204695 1859 ntBASIC18.03■□□□□ 0.48
Ubfd1Q78JW9 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ubfd1Q78JW9 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Ubfd1Q78JW9 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ubfd1Q78JW9 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ubfd1Q78JW9 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC18.03■□□□□ 0.48
Ubfd1Q78JW9 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ubfd1Q78JW9 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ubfd1Q78JW9 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Ubfd1Q78JW9 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC18.03■□□□□ 0.48
Ubfd1Q78JW9 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ubfd1Q78JW9 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ubfd1Q78JW9 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ubfd1Q78JW9 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Ubfd1Q78JW9 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
Ubfd1Q78JW9 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Ubfd1Q78JW9 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Ubfd1Q78JW9 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC18.02■□□□□ 0.48
Ubfd1Q78JW9 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Ubfd1Q78JW9 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC18.02■□□□□ 0.48
Ubfd1Q78JW9 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Ubfd1Q78JW9 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Ubfd1Q78JW9 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Ubfd1Q78JW9 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
Ubfd1Q78JW9 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Ubfd1Q78JW9 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Ubfd1Q78JW9 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Ubfd1Q78JW9 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Ubfd1Q78JW9 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
Ubfd1Q78JW9 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ubfd1Q78JW9 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ubfd1Q78JW9 Gm21596-201ENSMUST00000178049 1316 ntBASIC18.01■□□□□ 0.47
Ubfd1Q78JW9 Gm2399-201ENSMUST00000104944 225 ntBASIC18.01■□□□□ 0.47
Ubfd1Q78JW9 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC18.01■□□□□ 0.47
Ubfd1Q78JW9 Gm22325-201ENSMUST00000158904 308 ntBASIC18.01■□□□□ 0.47
Ubfd1Q78JW9 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ubfd1Q78JW9 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Ubfd1Q78JW9 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ubfd1Q78JW9 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ubfd1Q78JW9 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ubfd1Q78JW9 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Ubfd1Q78JW9 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Ubfd1Q78JW9 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Ubfd1Q78JW9 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Ubfd1Q78JW9 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC18■□□□□ 0.47
Ubfd1Q78JW9 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Ubfd1Q78JW9 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC18■□□□□ 0.47
Ubfd1Q78JW9 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Ubfd1Q78JW9 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC18■□□□□ 0.47
Ubfd1Q78JW9 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Ubfd1Q78JW9 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC18■□□□□ 0.47
Ubfd1Q78JW9 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Ubfd1Q78JW9 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Ubfd1Q78JW9 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC18■□□□□ 0.47
Ubfd1Q78JW9 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Ubfd1Q78JW9 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ubfd1Q78JW9 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ubfd1Q78JW9 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ubfd1Q78JW9 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ubfd1Q78JW9 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ubfd1Q78JW9 Gm15847-201ENSMUST00000121417 1065 ntBASIC17.99■□□□□ 0.47
Ubfd1Q78JW9 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
Ubfd1Q78JW9 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Ubfd1Q78JW9 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ubfd1Q78JW9 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ubfd1Q78JW9 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ubfd1Q78JW9 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ubfd1Q78JW9 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ubfd1Q78JW9 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Ubfd1Q78JW9 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ubfd1Q78JW9 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC17.98■□□□□ 0.47
Ubfd1Q78JW9 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC17.98■□□□□ 0.47
Ubfd1Q78JW9 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ubfd1Q78JW9 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ubfd1Q78JW9 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC17.98■□□□□ 0.47
Ubfd1Q78JW9 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ubfd1Q78JW9 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC17.98■□□□□ 0.47
Ubfd1Q78JW9 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
Ubfd1Q78JW9 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ubfd1Q78JW9 Flg-201ENSMUST00000050758 1488 ntBASIC17.97■□□□□ 0.47
Ubfd1Q78JW9 Gm11249-201ENSMUST00000117071 859 ntBASIC17.97■□□□□ 0.47
Ubfd1Q78JW9 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC17.97■□□□□ 0.47
Ubfd1Q78JW9 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 14.9 ms