Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Ddx55Q6ZPL9 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Ddx55Q6ZPL9 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Ddx55Q6ZPL9 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Ddx55Q6ZPL9 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ddx55Q6ZPL9 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ddx55Q6ZPL9 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ddx55Q6ZPL9 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ddx55Q6ZPL9 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ddx55Q6ZPL9 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ddx55Q6ZPL9 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC21.24■□□□□ 0.99
Ddx55Q6ZPL9 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ddx55Q6ZPL9 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Ddx55Q6ZPL9 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ddx55Q6ZPL9 AC124581.1-201ENSMUST00000225416 1399 ntBASIC21.23■□□□□ 0.99
Ddx55Q6ZPL9 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ddx55Q6ZPL9 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ddx55Q6ZPL9 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ddx55Q6ZPL9 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC21.23■□□□□ 0.99
Ddx55Q6ZPL9 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ddx55Q6ZPL9 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ddx55Q6ZPL9 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ddx55Q6ZPL9 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ddx55Q6ZPL9 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Ddx55Q6ZPL9 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ddx55Q6ZPL9 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ddx55Q6ZPL9 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ddx55Q6ZPL9 Gm45560-201ENSMUST00000211492 1472 ntBASIC21.22■□□□□ 0.99
Ddx55Q6ZPL9 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC21.22■□□□□ 0.99
Ddx55Q6ZPL9 Gm15375-201ENSMUST00000119510 849 ntBASIC21.22■□□□□ 0.99
Ddx55Q6ZPL9 Gm13559-201ENSMUST00000120476 863 ntBASIC21.22■□□□□ 0.99
Ddx55Q6ZPL9 Gm42545-201ENSMUST00000202755 922 ntBASIC21.22■□□□□ 0.99
Ddx55Q6ZPL9 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Ddx55Q6ZPL9 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Ddx55Q6ZPL9 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ddx55Q6ZPL9 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Ddx55Q6ZPL9 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
Ddx55Q6ZPL9 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC21.22■□□□□ 0.99
Ddx55Q6ZPL9 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ddx55Q6ZPL9 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ddx55Q6ZPL9 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Ddx55Q6ZPL9 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ddx55Q6ZPL9 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ddx55Q6ZPL9 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ddx55Q6ZPL9 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Ddx55Q6ZPL9 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC21.21■□□□□ 0.99
Ddx55Q6ZPL9 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Ddx55Q6ZPL9 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ddx55Q6ZPL9 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC21.21■□□□□ 0.99
Ddx55Q6ZPL9 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.99
Ddx55Q6ZPL9 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ddx55Q6ZPL9 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Ddx55Q6ZPL9 Gm37292-201ENSMUST00000192062 758 ntBASIC21.2■□□□□ 0.98
Ddx55Q6ZPL9 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC21.2■□□□□ 0.98
Ddx55Q6ZPL9 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Ddx55Q6ZPL9 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ddx55Q6ZPL9 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ddx55Q6ZPL9 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ddx55Q6ZPL9 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ddx55Q6ZPL9 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ddx55Q6ZPL9 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC21.2■□□□□ 0.98
Ddx55Q6ZPL9 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Ddx55Q6ZPL9 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ddx55Q6ZPL9 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ddx55Q6ZPL9 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
Ddx55Q6ZPL9 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC21.19■□□□□ 0.98
Ddx55Q6ZPL9 Gm11539-201ENSMUST00000119837 557 ntBASIC21.19■□□□□ 0.98
Ddx55Q6ZPL9 Gm13436-201ENSMUST00000120418 567 ntBASIC21.19■□□□□ 0.98
Ddx55Q6ZPL9 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ddx55Q6ZPL9 AC156016.1-201ENSMUST00000227190 1035 ntBASIC21.19■□□□□ 0.98
Ddx55Q6ZPL9 Odf3b-204ENSMUST00000227834 930 ntBASIC21.19■□□□□ 0.98
Ddx55Q6ZPL9 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC21.19■□□□□ 0.98
Ddx55Q6ZPL9 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ddx55Q6ZPL9 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC21.18■□□□□ 0.98
Ddx55Q6ZPL9 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Ddx55Q6ZPL9 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ddx55Q6ZPL9 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC21.18■□□□□ 0.98
Ddx55Q6ZPL9 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Ddx55Q6ZPL9 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ddx55Q6ZPL9 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ddx55Q6ZPL9 AC124392.1-201ENSMUST00000225172 5324 ntBASIC21.18■□□□□ 0.98
Ddx55Q6ZPL9 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ddx55Q6ZPL9 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Ddx55Q6ZPL9 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Ddx55Q6ZPL9 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ddx55Q6ZPL9 AC126028.2-201ENSMUST00000228100 1833 ntBASIC21.18■□□□□ 0.98
Ddx55Q6ZPL9 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Ddx55Q6ZPL9 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC21.17■□□□□ 0.98
Ddx55Q6ZPL9 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ddx55Q6ZPL9 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ddx55Q6ZPL9 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ddx55Q6ZPL9 Gm38285-201ENSMUST00000192928 922 ntBASIC21.17■□□□□ 0.98
Ddx55Q6ZPL9 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC21.17■□□□□ 0.98
Ddx55Q6ZPL9 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ddx55Q6ZPL9 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
Ddx55Q6ZPL9 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ddx55Q6ZPL9 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ddx55Q6ZPL9 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Ddx55Q6ZPL9 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ddx55Q6ZPL9 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms