Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Smarca1Q6PGB8 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Smarca1Q6PGB8 Gm35558-201ENSMUST00000222675 2219 ntBASIC20.63■□□□□ 0.89
Smarca1Q6PGB8 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Smarca1Q6PGB8 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Smarca1Q6PGB8 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Smarca1Q6PGB8 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Smarca1Q6PGB8 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC20.63■□□□□ 0.89
Smarca1Q6PGB8 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Smarca1Q6PGB8 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Smarca1Q6PGB8 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Smarca1Q6PGB8 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Smarca1Q6PGB8 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Smarca1Q6PGB8 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Smarca1Q6PGB8 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Smarca1Q6PGB8 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Smarca1Q6PGB8 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Smarca1Q6PGB8 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC20.62■□□□□ 0.89
Smarca1Q6PGB8 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Smarca1Q6PGB8 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Smarca1Q6PGB8 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Smarca1Q6PGB8 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Smarca1Q6PGB8 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Smarca1Q6PGB8 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Smarca1Q6PGB8 Gm7856-201ENSMUST00000117514 1493 ntBASIC20.62■□□□□ 0.89
Smarca1Q6PGB8 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Smarca1Q6PGB8 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Smarca1Q6PGB8 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Smarca1Q6PGB8 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Smarca1Q6PGB8 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Smarca1Q6PGB8 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Smarca1Q6PGB8 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Smarca1Q6PGB8 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Smarca1Q6PGB8 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Smarca1Q6PGB8 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Smarca1Q6PGB8 CT025689.6-201ENSMUST00000224991 1104 ntBASIC20.61■□□□□ 0.89
Smarca1Q6PGB8 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Smarca1Q6PGB8 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Smarca1Q6PGB8 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Smarca1Q6PGB8 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Smarca1Q6PGB8 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Smarca1Q6PGB8 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Smarca1Q6PGB8 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC20.6■□□□□ 0.89
Smarca1Q6PGB8 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Smarca1Q6PGB8 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Smarca1Q6PGB8 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC20.6■□□□□ 0.89
Smarca1Q6PGB8 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Smarca1Q6PGB8 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Smarca1Q6PGB8 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Smarca1Q6PGB8 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Smarca1Q6PGB8 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Smarca1Q6PGB8 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC20.59■□□□□ 0.89
Smarca1Q6PGB8 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Smarca1Q6PGB8 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Smarca1Q6PGB8 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC20.59■□□□□ 0.89
Smarca1Q6PGB8 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Smarca1Q6PGB8 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC20.59■□□□□ 0.89
Smarca1Q6PGB8 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
Smarca1Q6PGB8 Gm27011-201ENSMUST00000182352 972 ntBASIC20.59■□□□□ 0.89
Smarca1Q6PGB8 Gm6365-201ENSMUST00000054711 744 ntBASIC20.59■□□□□ 0.89
Smarca1Q6PGB8 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
Smarca1Q6PGB8 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Smarca1Q6PGB8 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Smarca1Q6PGB8 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Smarca1Q6PGB8 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Smarca1Q6PGB8 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Smarca1Q6PGB8 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC20.59■□□□□ 0.89
Smarca1Q6PGB8 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Smarca1Q6PGB8 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Smarca1Q6PGB8 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Smarca1Q6PGB8 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC20.58■□□□□ 0.89
Smarca1Q6PGB8 Nespas-201ENSMUST00000143738 1083 ntBASIC20.58■□□□□ 0.89
Smarca1Q6PGB8 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC20.58■□□□□ 0.88
Smarca1Q6PGB8 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Smarca1Q6PGB8 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC20.58■□□□□ 0.88
Smarca1Q6PGB8 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
Smarca1Q6PGB8 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC20.57■□□□□ 0.88
Smarca1Q6PGB8 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Smarca1Q6PGB8 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Smarca1Q6PGB8 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Smarca1Q6PGB8 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Smarca1Q6PGB8 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Smarca1Q6PGB8 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Smarca1Q6PGB8 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Smarca1Q6PGB8 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Smarca1Q6PGB8 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Smarca1Q6PGB8 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Smarca1Q6PGB8 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Smarca1Q6PGB8 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Smarca1Q6PGB8 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Smarca1Q6PGB8 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
Smarca1Q6PGB8 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Smarca1Q6PGB8 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Smarca1Q6PGB8 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Smarca1Q6PGB8 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC20.56■□□□□ 0.88
Smarca1Q6PGB8 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Smarca1Q6PGB8 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Smarca1Q6PGB8 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Smarca1Q6PGB8 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Smarca1Q6PGB8 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 16.4 ms