Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 AC122769.4-201ENSMUST00000228166 901 ntBASIC19.65■□□□□ 0.74
Shmt1P50431 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC19.65■□□□□ 0.74
Shmt1P50431 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Shmt1P50431 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Shmt1P50431 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Shmt1P50431 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Shmt1P50431 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Shmt1P50431 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Shmt1P50431 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Shmt1P50431 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
Shmt1P50431 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Shmt1P50431 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Shmt1P50431 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Shmt1P50431 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Shmt1P50431 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Shmt1P50431 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Shmt1P50431 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC19.64■□□□□ 0.73
Shmt1P50431 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Shmt1P50431 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC19.64■□□□□ 0.73
Shmt1P50431 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Shmt1P50431 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Shmt1P50431 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC19.63■□□□□ 0.73
Shmt1P50431 Gm9885-202ENSMUST00000186234 2209 ntBASIC19.63■□□□□ 0.73
Shmt1P50431 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC19.63■□□□□ 0.73
Shmt1P50431 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
Shmt1P50431 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC19.63■□□□□ 0.73
Shmt1P50431 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Shmt1P50431 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Shmt1P50431 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Shmt1P50431 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Shmt1P50431 Gm38342-201ENSMUST00000195710 2980 ntBASIC19.63■□□□□ 0.73
Shmt1P50431 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Shmt1P50431 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Shmt1P50431 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Shmt1P50431 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Shmt1P50431 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Shmt1P50431 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Shmt1P50431 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.62■□□□□ 0.73
Shmt1P50431 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Shmt1P50431 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC19.62■□□□□ 0.73
Shmt1P50431 Rab3c-203ENSMUST00000224180 967 ntBASIC19.62■□□□□ 0.73
Shmt1P50431 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Shmt1P50431 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Shmt1P50431 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Shmt1P50431 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC19.62■□□□□ 0.73
Shmt1P50431 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Shmt1P50431 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Shmt1P50431 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Shmt1P50431 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Shmt1P50431 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Shmt1P50431 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Shmt1P50431 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Shmt1P50431 Gm8309-201ENSMUST00000206627 1448 ntBASIC19.61■□□□□ 0.73
Shmt1P50431 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Shmt1P50431 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Shmt1P50431 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Shmt1P50431 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Shmt1P50431 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Shmt1P50431 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC19.61■□□□□ 0.73
Shmt1P50431 Gm10653-202ENSMUST00000139570 835 ntBASIC19.61■□□□□ 0.73
Shmt1P50431 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Shmt1P50431 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC19.61■□□□□ 0.73
Shmt1P50431 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Shmt1P50431 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Shmt1P50431 Gm44672-201ENSMUST00000206944 1098 ntBASIC19.61■□□□□ 0.73
Shmt1P50431 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Shmt1P50431 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Shmt1P50431 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC19.61■□□□□ 0.73
Shmt1P50431 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Shmt1P50431 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Shmt1P50431 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Shmt1P50431 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC19.6■□□□□ 0.73
Shmt1P50431 AC160393.1-201ENSMUST00000218378 1279 ntBASIC19.6■□□□□ 0.73
Shmt1P50431 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Shmt1P50431 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Shmt1P50431 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Shmt1P50431 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Shmt1P50431 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Shmt1P50431 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Shmt1P50431 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Shmt1P50431 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Shmt1P50431 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Shmt1P50431 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC19.59■□□□□ 0.73
Shmt1P50431 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Shmt1P50431 Gm12527-201ENSMUST00000117967 564 ntBASIC19.59■□□□□ 0.73
Shmt1P50431 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC19.59■□□□□ 0.73
Shmt1P50431 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC19.59■□□□□ 0.73
Shmt1P50431 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Shmt1P50431 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Shmt1P50431 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Shmt1P50431 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
Shmt1P50431 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Shmt1P50431 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Shmt1P50431 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Shmt1P50431 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Shmt1P50431 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Shmt1P50431 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Shmt1P50431 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Shmt1P50431 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Shmt1P50431 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 34.5 ms