Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Chd3B1AR17 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Chd3B1AR17 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Chd3B1AR17 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Chd3B1AR17 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
Chd3B1AR17 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Chd3B1AR17 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Chd3B1AR17 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Chd3B1AR17 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Chd3B1AR17 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Chd3B1AR17 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
Chd3B1AR17 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Chd3B1AR17 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Chd3B1AR17 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC18.21■□□□□ 0.51
Chd3B1AR17 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Chd3B1AR17 Gm22240-201ENSMUST00000175225 82 ntBASIC18.21■□□□□ 0.51
Chd3B1AR17 AC163280.1-201ENSMUST00000228194 1100 ntBASIC18.21■□□□□ 0.51
Chd3B1AR17 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chd3B1AR17 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Chd3B1AR17 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chd3B1AR17 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC18.2■□□□□ 0.5
Chd3B1AR17 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC18.2■□□□□ 0.5
Chd3B1AR17 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chd3B1AR17 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chd3B1AR17 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC18.2■□□□□ 0.5
Chd3B1AR17 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Chd3B1AR17 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chd3B1AR17 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chd3B1AR17 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Chd3B1AR17 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Chd3B1AR17 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC18.19■□□□□ 0.5
Chd3B1AR17 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Chd3B1AR17 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Chd3B1AR17 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Chd3B1AR17 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Chd3B1AR17 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Chd3B1AR17 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Chd3B1AR17 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC18.19■□□□□ 0.5
Chd3B1AR17 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Chd3B1AR17 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Chd3B1AR17 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Chd3B1AR17 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Chd3B1AR17 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chd3B1AR17 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chd3B1AR17 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chd3B1AR17 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC18.18■□□□□ 0.5
Chd3B1AR17 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chd3B1AR17 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chd3B1AR17 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chd3B1AR17 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chd3B1AR17 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chd3B1AR17 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chd3B1AR17 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC18.18■□□□□ 0.5
Chd3B1AR17 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chd3B1AR17 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chd3B1AR17 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Chd3B1AR17 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chd3B1AR17 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chd3B1AR17 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chd3B1AR17 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chd3B1AR17 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chd3B1AR17 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chd3B1AR17 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chd3B1AR17 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chd3B1AR17 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chd3B1AR17 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Chd3B1AR17 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Chd3B1AR17 Gm13158-201ENSMUST00000122007 736 ntBASIC18.16■□□□□ 0.5
Chd3B1AR17 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Chd3B1AR17 Wnt10b-205ENSMUST00000226846 1204 ntBASIC18.16■□□□□ 0.5
Chd3B1AR17 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC18.16■□□□□ 0.5
Chd3B1AR17 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chd3B1AR17 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chd3B1AR17 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chd3B1AR17 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chd3B1AR17 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Chd3B1AR17 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chd3B1AR17 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Chd3B1AR17 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chd3B1AR17 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC18.15■□□□□ 0.5
Chd3B1AR17 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC18.15■□□□□ 0.5
Chd3B1AR17 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chd3B1AR17 Gm12896-201ENSMUST00000118430 226 ntBASIC18.15■□□□□ 0.5
Chd3B1AR17 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Chd3B1AR17 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
Chd3B1AR17 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chd3B1AR17 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chd3B1AR17 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Chd3B1AR17 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC18.14■□□□□ 0.5
Chd3B1AR17 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chd3B1AR17 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Chd3B1AR17 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chd3B1AR17 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC18.14■□□□□ 0.49
Chd3B1AR17 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chd3B1AR17 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Chd3B1AR17 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chd3B1AR17 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chd3B1AR17 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chd3B1AR17 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chd3B1AR17 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 15.4 ms