Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm13915-201ENSMUST00000119314 931 ntBASIC9□□□□□ -0.97
Traf1P39428 Gm11816-202ENSMUST00000149848 714 ntTSL 2 BASIC9□□□□□ -0.97
Traf1P39428 Gm21312-202ENSMUST00000180889 1246 ntAPPRIS ALT2 TSL 2 BASIC9□□□□□ -0.97
Traf1P39428 Gm21304-202ENSMUST00000181059 1246 ntAPPRIS P1 TSL 2 BASIC9□□□□□ -0.97
Traf1P39428 Gm8764-202ENSMUST00000181179 1246 ntAPPRIS P1 TSL 2 BASIC9□□□□□ -0.97
Traf1P39428 Gm6763-202ENSMUST00000181287 1246 ntAPPRIS P1 TSL 2 BASIC9□□□□□ -0.97
Traf1P39428 Gm21293-203ENSMUST00000181634 1246 ntAPPRIS P1 TSL 2 BASIC9□□□□□ -0.97
Traf1P39428 Gm20765-202ENSMUST00000181703 1246 ntAPPRIS ALT2 TSL 2 BASIC9□□□□□ -0.97
Traf1P39428 Gm45145-203ENSMUST00000208872 958 ntTSL 5 BASIC9□□□□□ -0.97
Traf1P39428 Gm7151-201ENSMUST00000211511 954 ntBASIC9□□□□□ -0.97
Traf1P39428 Spata19-204ENSMUST00000214287 642 ntAPPRIS ALT2 TSL 1 (best) BASIC9□□□□□ -0.97
Traf1P39428 Ndufa7-201ENSMUST00000048249 508 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Traf1P39428 Spink6-201ENSMUST00000068473 587 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Traf1P39428 Krtap8-1-201ENSMUST00000072280 579 ntAPPRIS P1 BASIC9□□□□□ -0.97
Traf1P39428 Gphn-202ENSMUST00000110388 3300 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Traf1P39428 Csnk1g1-204ENSMUST00000130798 1648 ntTSL 5 BASIC9□□□□□ -0.97
Traf1P39428 6530403H02Rik-202ENSMUST00000182124 3191 ntTSL 1 (best) BASIC9□□□□□ -0.97
Traf1P39428 Jakmip2-201ENSMUST00000082254 3511 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Traf1P39428 Peak1-201ENSMUST00000061552 6996 ntAPPRIS P2 TSL 1 (best) BASIC9□□□□□ -0.97
Traf1P39428 Fmo4-202ENSMUST00000111525 2683 ntAPPRIS P1 TSL 5 BASIC9□□□□□ -0.97
Traf1P39428 Gatad2b-203ENSMUST00000197988 1815 ntTSL 1 (best) BASIC9□□□□□ -0.97
Traf1P39428 AC130219.1-201ENSMUST00000228406 3433 ntBASIC9□□□□□ -0.97
Traf1P39428 Mapk1ip1l-202ENSMUST00000166743 4542 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Traf1P39428 Gm42636-201ENSMUST00000197174 2239 ntBASIC9□□□□□ -0.97
Traf1P39428 1700027J07Rik-203ENSMUST00000217501 1884 ntTSL 5 BASIC9□□□□□ -0.97
Traf1P39428 Zfp292-202ENSMUST00000098163 9941 ntAPPRIS ALT2 TSL 1 (best) BASIC9□□□□□ -0.97
Traf1P39428 Ogdhl-203ENSMUST00000228529 3723 ntAPPRIS ALT2 BASIC9□□□□□ -0.97
Traf1P39428 Erc1-201ENSMUST00000032279 8356 ntAPPRIS P2 TSL 1 (best) BASIC8.99□□□□□ -0.97
Traf1P39428 Cacna1e-201ENSMUST00000004214 12697 ntTSL 5 BASIC8.99□□□□□ -0.97
Traf1P39428 Olfr12-202ENSMUST00000213247 4158 ntAPPRIS P1 TSL 5 BASIC8.99□□□□□ -0.97
Traf1P39428 Nt5dc1-203ENSMUST00000105512 2727 ntAPPRIS ALT2 TSL 1 (best) BASIC8.99□□□□□ -0.97
Traf1P39428 Vmn1r176-202ENSMUST00000226319 2930 ntAPPRIS P1 BASIC8.99□□□□□ -0.97
Traf1P39428 Cs-201ENSMUST00000005826 2926 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Traf1P39428 Ankrd27-206ENSMUST00000190503 4086 ntAPPRIS ALT2 TSL 1 (best) BASIC8.99□□□□□ -0.97
Traf1P39428 A330015K06Rik-201ENSMUST00000195489 4286 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Traf1P39428 Aldh1l2-201ENSMUST00000020497 6027 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Traf1P39428 Vmn1r44-212ENSMUST00000228183 1838 ntBASIC8.99□□□□□ -0.97
Traf1P39428 Cdon-201ENSMUST00000042842 7213 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Traf1P39428 Vmn1r44-213ENSMUST00000228700 2004 ntAPPRIS P1 BASIC8.99□□□□□ -0.97
Traf1P39428 Angpt2-201ENSMUST00000033846 3560 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Traf1P39428 Bicc1-202ENSMUST00000131445 3005 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Traf1P39428 Olfr1019-201ENSMUST00000102634 933 ntAPPRIS P1 BASIC8.99□□□□□ -0.97
Traf1P39428 Gm24195-201ENSMUST00000116804 137 ntBASIC8.99□□□□□ -0.97
Traf1P39428 Gm13680-201ENSMUST00000119790 793 ntBASIC8.99□□□□□ -0.97
Traf1P39428 Gm15160-201ENSMUST00000120553 907 ntBASIC8.99□□□□□ -0.97
Traf1P39428 Gm13936-201ENSMUST00000130416 715 ntTSL 3 BASIC8.99□□□□□ -0.97
Traf1P39428 Gm12158-201ENSMUST00000130493 631 ntTSL 3 BASIC8.99□□□□□ -0.97
Traf1P39428 Gm16276-201ENSMUST00000131218 262 ntBASIC8.99□□□□□ -0.97
Traf1P39428 4930439A04Rik-201ENSMUST00000137241 739 ntTSL 3 BASIC8.99□□□□□ -0.97
Traf1P39428 1810062O18Rik-204ENSMUST00000141265 751 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Traf1P39428 Olfr759-ps1-201ENSMUST00000174238 700 ntBASIC8.99□□□□□ -0.97
Traf1P39428 Gm28195-201ENSMUST00000186992 372 ntBASIC8.99□□□□□ -0.97
Traf1P39428 Gm36961-201ENSMUST00000191980 132 ntBASIC8.99□□□□□ -0.97
Traf1P39428 Gm1647-201ENSMUST00000195406 735 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Traf1P39428 Gm42464-201ENSMUST00000196717 417 ntBASIC8.99□□□□□ -0.97
Traf1P39428 Gm43287-201ENSMUST00000197747 600 ntBASIC8.99□□□□□ -0.97
Traf1P39428 Gm43560-201ENSMUST00000198100 773 ntBASIC8.99□□□□□ -0.97
Traf1P39428 5930435M05Rik-202ENSMUST00000207936 414 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Traf1P39428 4930483O08Rik-201ENSMUST00000209850 1030 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Traf1P39428 Gm18972-201ENSMUST00000218873 630 ntBASIC8.99□□□□□ -0.97
Traf1P39428 Med21-201ENSMUST00000032429 814 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Traf1P39428 Grxcr1-201ENSMUST00000094715 1071 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Traf1P39428 Atf2-201ENSMUST00000055833 4210 ntAPPRIS P1 TSL 5 BASIC8.99□□□□□ -0.97
Traf1P39428 Gm27048-201ENSMUST00000182891 4627 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Traf1P39428 Gm43254-201ENSMUST00000199187 2491 ntBASIC8.99□□□□□ -0.97
Traf1P39428 Pm20d1-202ENSMUST00000112393 6900 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Traf1P39428 AC154347.1-201ENSMUST00000221358 3105 ntBASIC8.99□□□□□ -0.97
Traf1P39428 Gm29571-201ENSMUST00000191547 1909 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Traf1P39428 Gm26744-201ENSMUST00000181834 1731 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Traf1P39428 Mme-201ENSMUST00000029400 3782 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Traf1P39428 5330413P13Rik-202ENSMUST00000143453 3630 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Traf1P39428 Mbd4-201ENSMUST00000032469 3614 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Traf1P39428 Zfp14-202ENSMUST00000207072 2835 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Traf1P39428 Dclk1-208ENSMUST00000198437 4315 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Traf1P39428 Pdgfd-203ENSMUST00000214892 2862 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
Traf1P39428 Adarb2-201ENSMUST00000064473 6721 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
Traf1P39428 Pum1-204ENSMUST00000105991 4614 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
Traf1P39428 Gm37663-201ENSMUST00000191887 2299 ntBASIC8.98□□□□□ -0.97
Traf1P39428 Vmn1r44-206ENSMUST00000226760 2070 ntAPPRIS P1 BASIC8.98□□□□□ -0.97
Traf1P39428 Gm7982-201ENSMUST00000101011 1443 ntAPPRIS ALT2 TSL 5 BASIC8.98□□□□□ -0.97
Traf1P39428 Gm6351-201ENSMUST00000101021 1443 ntAPPRIS ALT2 TSL 5 BASIC8.98□□□□□ -0.97
Traf1P39428 Gm7682-201ENSMUST00000098289 1443 ntAPPRIS ALT2 TSL 5 BASIC8.98□□□□□ -0.97
Traf1P39428 Kcnma1-203ENSMUST00000100831 3261 ntTSL 5 BASIC8.98□□□□□ -0.97
Traf1P39428 Dab1-201ENSMUST00000106826 996 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
Traf1P39428 Spata48-202ENSMUST00000109678 753 ntAPPRIS P2 TSL 1 (best) BASIC8.98□□□□□ -0.97
Traf1P39428 Gm6491-201ENSMUST00000118273 990 ntBASIC8.98□□□□□ -0.97
Traf1P39428 Gm14241-201ENSMUST00000151260 264 ntTSL 5 BASIC8.98□□□□□ -0.97
Traf1P39428 Il21-202ENSMUST00000161015 529 ntAPPRIS ALT2 TSL 1 (best) BASIC8.98□□□□□ -0.97
Traf1P39428 Gm6838-201ENSMUST00000172851 582 ntBASIC8.98□□□□□ -0.97
Traf1P39428 Vmn1r-ps18-201ENSMUST00000176901 876 ntBASIC8.98□□□□□ -0.97
Traf1P39428 Gm3121-201ENSMUST00000187086 406 ntBASIC8.98□□□□□ -0.97
Traf1P39428 Gm28622-201ENSMUST00000189842 507 ntTSL 5 BASIC8.98□□□□□ -0.97
Traf1P39428 AF067063-202ENSMUST00000195234 885 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
Traf1P39428 Gm43590-201ENSMUST00000195987 387 ntBASIC8.98□□□□□ -0.97
Traf1P39428 Gm31881-202ENSMUST00000199455 559 ntTSL 3 BASIC8.98□□□□□ -0.97
Traf1P39428 Lsm5-205ENSMUST00000203958 416 ntTSL 3 BASIC8.98□□□□□ -0.97
Traf1P39428 Gm20670-201ENSMUST00000206468 338 ntTSL 3 BASIC8.98□□□□□ -0.97
Traf1P39428 Gm5086-203ENSMUST00000210897 1136 ntTSL 5 BASIC8.98□□□□□ -0.97
Traf1P39428 AC132587.1-201ENSMUST00000220562 166 ntBASIC8.98□□□□□ -0.97
Traf1P39428 Rpl7-201ENSMUST00000058437 1163 ntAPPRIS P2 TSL 1 (best) BASIC8.98□□□□□ -0.97
Retrieved 100 of 76,532 protein–RNA pairs in 80.5 ms