Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Acsm5-201ENSMUST00000066465 2981 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Traf1P39428 Gm8127-201ENSMUST00000163655 1427 ntAPPRIS P1 TSL 5 BASIC9.06□□□□□ -0.96
Traf1P39428 Wdr44-202ENSMUST00000101670 4002 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Traf1P39428 Actr10-201ENSMUST00000021479 4022 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Traf1P39428 Pogz-201ENSMUST00000042402 4775 ntAPPRIS ALT2 TSL 1 (best) BASIC9.06□□□□□ -0.96
Traf1P39428 Fbxw7-202ENSMUST00000107675 3599 ntAPPRIS ALT1 TSL 5 BASIC9.06□□□□□ -0.96
Traf1P39428 Gm43980-201ENSMUST00000204899 1612 ntBASIC9.06□□□□□ -0.96
Traf1P39428 Dtna-202ENSMUST00000115832 6295 ntAPPRIS ALT2 TSL 1 (best) BASIC9.06□□□□□ -0.96
Traf1P39428 Pik3cg-205ENSMUST00000217915 3340 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
Traf1P39428 Gm37199-201ENSMUST00000193881 4065 ntBASIC9.06□□□□□ -0.96
Traf1P39428 Nsun2-201ENSMUST00000022087 4164 ntAPPRIS ALT2 TSL 1 (best) BASIC9.06□□□□□ -0.96
Traf1P39428 Tdgf1-201ENSMUST00000035075 1932 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Traf1P39428 Gm12306-201ENSMUST00000117256 171 ntBASIC9.06□□□□□ -0.96
Traf1P39428 Gm14746-201ENSMUST00000120309 741 ntBASIC9.06□□□□□ -0.96
Traf1P39428 Gm27019-201ENSMUST00000183056 404 ntBASIC9.06□□□□□ -0.96
Traf1P39428 Gm29999-202ENSMUST00000193554 671 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
Traf1P39428 Gm37585-201ENSMUST00000195440 280 ntBASIC9.06□□□□□ -0.96
Traf1P39428 Olfr1389-201ENSMUST00000203369 1073 ntAPPRIS P1 BASIC9.06□□□□□ -0.96
Traf1P39428 Cd69-203ENSMUST00000204411 560 ntAPPRIS ALT2 TSL 1 (best) BASIC9.06□□□□□ -0.96
Traf1P39428 Gm44902-201ENSMUST00000206177 805 ntBASIC9.06□□□□□ -0.96
Traf1P39428 Olfr1294-201ENSMUST00000208334 942 ntAPPRIS P1 BASIC9.06□□□□□ -0.96
Traf1P39428 Gm38430-201ENSMUST00000209888 1240 ntBASIC9.06□□□□□ -0.96
Traf1P39428 Thy1-204ENSMUST00000214627 446 ntTSL 3 BASIC9.06□□□□□ -0.96
Traf1P39428 Gm7392-201ENSMUST00000217815 345 ntBASIC9.06□□□□□ -0.96
Traf1P39428 Gm46317-201ENSMUST00000221103 393 ntBASIC9.06□□□□□ -0.96
Traf1P39428 Gm46323-201ENSMUST00000223136 628 ntTSL 5 BASIC9.06□□□□□ -0.96
Traf1P39428 AC126939.4-201ENSMUST00000225360 743 ntBASIC9.06□□□□□ -0.96
Traf1P39428 Acrbp-201ENSMUST00000032481 584 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
Traf1P39428 Rpl31-ps20-201ENSMUST00000080982 378 ntBASIC9.06□□□□□ -0.96
Traf1P39428 Olfr1338-201ENSMUST00000084315 942 ntAPPRIS P2 BASIC9.06□□□□□ -0.96
Traf1P39428 Olfr220-201ENSMUST00000085861 978 ntAPPRIS P1 BASIC9.06□□□□□ -0.96
Traf1P39428 Klrk1-202ENSMUST00000095412 1019 ntAPPRIS ALT2 TSL 1 (best) BASIC9.06□□□□□ -0.96
Traf1P39428 Mast4-201ENSMUST00000099202 7709 ntAPPRIS ALT2 TSL 5 BASIC9.06□□□□□ -0.96
Traf1P39428 Gm6767-201ENSMUST00000118650 1381 ntBASIC9.06□□□□□ -0.96
Traf1P39428 Olfr961-202ENSMUST00000219295 3374 ntAPPRIS P1 TSL 5 BASIC9.06□□□□□ -0.96
Traf1P39428 Gm28892-201ENSMUST00000188123 2721 ntTSL 5 BASIC9.06□□□□□ -0.96
Traf1P39428 B230354K17Rik-201ENSMUST00000181149 4897 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
Traf1P39428 Slfn4-202ENSMUST00000167596 3703 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Traf1P39428 Gm44737-201ENSMUST00000206950 2355 ntTSL 5 BASIC9.06□□□□□ -0.96
Traf1P39428 Ctnnd1-224ENSMUST00000111698 5850 ntTSL 5 BASIC9.06□□□□□ -0.96
Traf1P39428 Gprin3-201ENSMUST00000051065 8339 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Traf1P39428 AU015836-202ENSMUST00000121565 2997 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
Traf1P39428 Bcorl1-201ENSMUST00000037596 7360 ntAPPRIS P1 TSL 5 BASIC9.06□□□□□ -0.96
Traf1P39428 Zfp27-201ENSMUST00000053521 3150 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Traf1P39428 Hdlbp-202ENSMUST00000170883 6231 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Traf1P39428 Ltn1-201ENSMUST00000039449 7737 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
Traf1P39428 4933406C10Rik-202ENSMUST00000181670 1633 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Traf1P39428 Cnot2-204ENSMUST00000164088 2618 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Traf1P39428 Tpd52l2-208ENSMUST00000149163 3603 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Traf1P39428 Dlgap2-201ENSMUST00000043279 3580 ntAPPRIS ALT2 TSL 5 BASIC9.05□□□□□ -0.96
Traf1P39428 Gm31343-201ENSMUST00000207967 2454 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Traf1P39428 4930471D02Rik-201ENSMUST00000180815 2075 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Traf1P39428 Vwde-202ENSMUST00000203074 5626 ntAPPRIS P1 TSL 5 BASIC9.05□□□□□ -0.96
Traf1P39428 Gm6356-201ENSMUST00000166618 1757 ntAPPRIS P1 TSL 5 BASIC9.05□□□□□ -0.96
Traf1P39428 Gm18908-201ENSMUST00000207125 1483 ntBASIC9.05□□□□□ -0.96
Traf1P39428 Ppp1r3b-202ENSMUST00000210337 4349 ntAPPRIS P1 TSL 2 BASIC9.05□□□□□ -0.96
Traf1P39428 Gm22022-201ENSMUST00000104355 127 ntBASIC9.05□□□□□ -0.96
Traf1P39428 Gm11948-201ENSMUST00000142322 539 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Traf1P39428 Gm24647-201ENSMUST00000157112 113 ntBASIC9.05□□□□□ -0.96
Traf1P39428 Gm9141-201ENSMUST00000159355 1007 ntBASIC9.05□□□□□ -0.96
Traf1P39428 Gm28821-201ENSMUST00000185637 610 ntTSL 3 BASIC9.05□□□□□ -0.96
Traf1P39428 Gm28285-204ENSMUST00000187793 601 ntAPPRIS P5 TSL 5 BASIC9.05□□□□□ -0.96
Traf1P39428 Gm5251-201ENSMUST00000188959 472 ntBASIC9.05□□□□□ -0.96
Traf1P39428 Gm553-201ENSMUST00000189527 701 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Traf1P39428 Gm38226-201ENSMUST00000192207 521 ntBASIC9.05□□□□□ -0.96
Traf1P39428 Gm37729-201ENSMUST00000194761 1172 ntBASIC9.05□□□□□ -0.96
Traf1P39428 Gm8925-201ENSMUST00000197212 763 ntBASIC9.05□□□□□ -0.96
Traf1P39428 Gm30613-201ENSMUST00000197277 512 ntTSL 3 BASIC9.05□□□□□ -0.96
Traf1P39428 Gm43108-201ENSMUST00000200525 293 ntBASIC9.05□□□□□ -0.96
Traf1P39428 Gm44380-201ENSMUST00000203125 293 ntBASIC9.05□□□□□ -0.96
Traf1P39428 A330076H08Rik-203ENSMUST00000208822 1164 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Traf1P39428 Olfr471-201ENSMUST00000210091 936 ntBASIC9.05□□□□□ -0.96
Traf1P39428 AC163038.4-201ENSMUST00000224942 474 ntBASIC9.05□□□□□ -0.96
Traf1P39428 AC165260.3-201ENSMUST00000225101 665 ntBASIC9.05□□□□□ -0.96
Traf1P39428 AC099629.1-201ENSMUST00000226778 464 ntBASIC9.05□□□□□ -0.96
Traf1P39428 CT009515.1-201ENSMUST00000228127 586 ntBASIC9.05□□□□□ -0.96
Traf1P39428 Krtap3-1-201ENSMUST00000055502 604 ntAPPRIS P1 BASIC9.05□□□□□ -0.96
Traf1P39428 Mrpl42-201ENSMUST00000075829 666 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
Traf1P39428 Rnase1-201ENSMUST00000080126 992 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
Traf1P39428 Skp2-202ENSMUST00000110585 6185 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Traf1P39428 Proz-201ENSMUST00000033822 3361 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
Traf1P39428 Zfp780b-203ENSMUST00000205874 1907 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Traf1P39428 Adgrd1-203ENSMUST00000156437 4141 ntAPPRIS ALT2 TSL 1 (best) BASIC9.05□□□□□ -0.96
Traf1P39428 9330102E08Rik-201ENSMUST00000204642 3843 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Traf1P39428 Gprasp2-201ENSMUST00000113136 3736 ntAPPRIS P1 TSL 5 BASIC9.05□□□□□ -0.96
Traf1P39428 Fbxo16-204ENSMUST00000226005 3700 ntAPPRIS ALT2 BASIC9.05□□□□□ -0.96
Traf1P39428 Tfpi2-201ENSMUST00000031674 1530 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
Traf1P39428 C8a-203ENSMUST00000106808 3539 ntTSL 2 BASIC9.05□□□□□ -0.96
Traf1P39428 Xrn2-201ENSMUST00000028921 3434 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
Traf1P39428 Gm39526-201ENSMUST00000208925 1413 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Traf1P39428 Gsdmc3-201ENSMUST00000089894 1443 ntAPPRIS P1 TSL 5 BASIC9.05□□□□□ -0.96
Traf1P39428 Epg5-201ENSMUST00000044622 9672 ntAPPRIS P1 TSL 5 BASIC9.05□□□□□ -0.96
Traf1P39428 Cntn1-204ENSMUST00000169825 5671 ntAPPRIS P1 TSL 5 BASIC9.05□□□□□ -0.96
Traf1P39428 Gm36737-201ENSMUST00000209653 2189 ntTSL 5 BASIC9.05□□□□□ -0.96
Traf1P39428 March1-204ENSMUST00000110253 2748 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
Traf1P39428 Cep72-201ENSMUST00000036456 3641 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Traf1P39428 Gpm6b-203ENSMUST00000112224 4644 ntAPPRIS ALT1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Traf1P39428 Gm6249-201ENSMUST00000211142 3314 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
Traf1P39428 Dgkh-204ENSMUST00000227767 3319 ntBASIC9.04□□□□□ -0.96
Traf1P39428 Xlr5a-203ENSMUST00000114521 1474 ntTSL 5 BASIC9.04□□□□□ -0.96
Retrieved 100 of 76,532 protein–RNA pairs in 63.5 ms