Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC25.93■■□□□ 1.74
Scn4aQ9ER60 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Scn4aQ9ER60 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC25.93■■□□□ 1.74
Scn4aQ9ER60 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
Scn4aQ9ER60 Gm25016-201ENSMUST00000158399 131 ntBASIC25.93■■□□□ 1.74
Scn4aQ9ER60 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Scn4aQ9ER60 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
Scn4aQ9ER60 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
Scn4aQ9ER60 Gm12085-201ENSMUST00000119263 940 ntBASIC25.92■■□□□ 1.74
Scn4aQ9ER60 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC25.92■■□□□ 1.74
Scn4aQ9ER60 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC25.92■■□□□ 1.74
Scn4aQ9ER60 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC25.92■■□□□ 1.74
Scn4aQ9ER60 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC25.92■■□□□ 1.74
Scn4aQ9ER60 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC25.92■■□□□ 1.74
Scn4aQ9ER60 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
Scn4aQ9ER60 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
Scn4aQ9ER60 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
Scn4aQ9ER60 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Scn4aQ9ER60 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC25.91■■□□□ 1.74
Scn4aQ9ER60 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC25.91■■□□□ 1.74
Scn4aQ9ER60 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC25.91■■□□□ 1.74
Scn4aQ9ER60 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Scn4aQ9ER60 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Scn4aQ9ER60 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC25.91■■□□□ 1.74
Scn4aQ9ER60 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC25.91■■□□□ 1.74
Scn4aQ9ER60 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC25.91■■□□□ 1.74
Scn4aQ9ER60 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC25.91■■□□□ 1.74
Scn4aQ9ER60 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC25.9■■□□□ 1.74
Scn4aQ9ER60 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC25.9■■□□□ 1.74
Scn4aQ9ER60 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC25.9■■□□□ 1.74
Scn4aQ9ER60 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC25.9■■□□□ 1.74
Scn4aQ9ER60 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC25.9■■□□□ 1.74
Scn4aQ9ER60 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC25.9■■□□□ 1.74
Scn4aQ9ER60 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Scn4aQ9ER60 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC25.9■■□□□ 1.74
Scn4aQ9ER60 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
Scn4aQ9ER60 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
Scn4aQ9ER60 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC25.89■■□□□ 1.74
Scn4aQ9ER60 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC25.89■■□□□ 1.74
Scn4aQ9ER60 Gm29518-201ENSMUST00000190858 372 ntBASIC25.89■■□□□ 1.74
Scn4aQ9ER60 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
Scn4aQ9ER60 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC25.89■■□□□ 1.74
Scn4aQ9ER60 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
Scn4aQ9ER60 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC25.89■■□□□ 1.73
Scn4aQ9ER60 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC25.88■■□□□ 1.73
Scn4aQ9ER60 Gm4217-201ENSMUST00000182243 1002 ntBASIC25.88■■□□□ 1.73
Scn4aQ9ER60 Gm6443-201ENSMUST00000203599 874 ntBASIC25.88■■□□□ 1.73
Scn4aQ9ER60 Gm5587-201ENSMUST00000206270 674 ntBASIC25.88■■□□□ 1.73
Scn4aQ9ER60 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC25.88■■□□□ 1.73
Scn4aQ9ER60 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
Scn4aQ9ER60 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC25.88■■□□□ 1.73
Scn4aQ9ER60 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC25.88■■□□□ 1.73
Scn4aQ9ER60 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC25.88■■□□□ 1.73
Scn4aQ9ER60 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC25.88■■□□□ 1.73
Scn4aQ9ER60 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Scn4aQ9ER60 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Scn4aQ9ER60 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
Scn4aQ9ER60 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Scn4aQ9ER60 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC25.87■■□□□ 1.73
Scn4aQ9ER60 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC25.87■■□□□ 1.73
Scn4aQ9ER60 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Scn4aQ9ER60 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Scn4aQ9ER60 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Scn4aQ9ER60 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
Scn4aQ9ER60 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
Scn4aQ9ER60 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Scn4aQ9ER60 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC25.86■■□□□ 1.73
Scn4aQ9ER60 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Scn4aQ9ER60 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Scn4aQ9ER60 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC25.86■■□□□ 1.73
Scn4aQ9ER60 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC25.86■■□□□ 1.73
Scn4aQ9ER60 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC25.86■■□□□ 1.73
Scn4aQ9ER60 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Scn4aQ9ER60 Gm27357-201ENSMUST00000183754 135 ntBASIC25.86■■□□□ 1.73
Scn4aQ9ER60 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC25.85■■□□□ 1.73
Scn4aQ9ER60 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC25.85■■□□□ 1.73
Scn4aQ9ER60 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC25.85■■□□□ 1.73
Scn4aQ9ER60 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC25.85■■□□□ 1.73
Scn4aQ9ER60 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC25.85■■□□□ 1.73
Scn4aQ9ER60 Gm2274-201ENSMUST00000184539 609 ntBASIC25.85■■□□□ 1.73
Scn4aQ9ER60 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC25.85■■□□□ 1.73
Scn4aQ9ER60 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Scn4aQ9ER60 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
Scn4aQ9ER60 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
Scn4aQ9ER60 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Scn4aQ9ER60 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Scn4aQ9ER60 Gm17808-201ENSMUST00000200859 894 ntBASIC25.84■■□□□ 1.73
Scn4aQ9ER60 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
Scn4aQ9ER60 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC25.83■■□□□ 1.73
Scn4aQ9ER60 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC25.82■■□□□ 1.72
Scn4aQ9ER60 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC25.82■■□□□ 1.72
Scn4aQ9ER60 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC25.82■■□□□ 1.72
Scn4aQ9ER60 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Scn4aQ9ER60 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Scn4aQ9ER60 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC25.82■■□□□ 1.72
Scn4aQ9ER60 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC25.82■■□□□ 1.72
Scn4aQ9ER60 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Scn4aQ9ER60 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC25.81■■□□□ 1.72
Scn4aQ9ER60 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC25.81■■□□□ 1.72
Scn4aQ9ER60 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC25.81■■□□□ 1.72
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms