Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC25.67■■□□□ 1.7
Usp40Q8BWR4 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Usp40Q8BWR4 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
Usp40Q8BWR4 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
Usp40Q8BWR4 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC25.66■■□□□ 1.7
Usp40Q8BWR4 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
Usp40Q8BWR4 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC25.66■■□□□ 1.7
Usp40Q8BWR4 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC25.66■■□□□ 1.7
Usp40Q8BWR4 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC25.66■■□□□ 1.7
Usp40Q8BWR4 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Usp40Q8BWR4 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Usp40Q8BWR4 Gm18688-201ENSMUST00000204695 1859 ntBASIC25.66■■□□□ 1.7
Usp40Q8BWR4 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC25.65■■□□□ 1.7
Usp40Q8BWR4 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC25.65■■□□□ 1.7
Usp40Q8BWR4 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Usp40Q8BWR4 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC25.65■■□□□ 1.7
Usp40Q8BWR4 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC25.65■■□□□ 1.7
Usp40Q8BWR4 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC25.65■■□□□ 1.7
Usp40Q8BWR4 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC25.65■■□□□ 1.7
Usp40Q8BWR4 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC25.65■■□□□ 1.7
Usp40Q8BWR4 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
Usp40Q8BWR4 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC25.64■■□□□ 1.7
Usp40Q8BWR4 Gm11927-201ENSMUST00000118472 759 ntBASIC25.64■■□□□ 1.7
Usp40Q8BWR4 Mir6982-201ENSMUST00000184354 68 ntBASIC25.64■■□□□ 1.7
Usp40Q8BWR4 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
Usp40Q8BWR4 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
Usp40Q8BWR4 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Usp40Q8BWR4 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
Usp40Q8BWR4 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC25.63■■□□□ 1.69
Usp40Q8BWR4 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Usp40Q8BWR4 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
Usp40Q8BWR4 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
Usp40Q8BWR4 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
Usp40Q8BWR4 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Usp40Q8BWR4 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC25.62■■□□□ 1.69
Usp40Q8BWR4 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Usp40Q8BWR4 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Usp40Q8BWR4 Gm13158-201ENSMUST00000122007 736 ntBASIC25.62■■□□□ 1.69
Usp40Q8BWR4 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC25.62■■□□□ 1.69
Usp40Q8BWR4 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Usp40Q8BWR4 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC25.62■■□□□ 1.69
Usp40Q8BWR4 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC25.62■■□□□ 1.69
Usp40Q8BWR4 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
Usp40Q8BWR4 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Usp40Q8BWR4 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Usp40Q8BWR4 H2-K2-201ENSMUST00000174250 1049 ntBASIC25.61■■□□□ 1.69
Usp40Q8BWR4 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Usp40Q8BWR4 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
Usp40Q8BWR4 Flg-201ENSMUST00000050758 1488 ntBASIC25.6■■□□□ 1.69
Usp40Q8BWR4 Hsf1-204ENSMUST00000226872 2104 ntBASIC25.6■■□□□ 1.69
Usp40Q8BWR4 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
Usp40Q8BWR4 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC25.6■■□□□ 1.69
Usp40Q8BWR4 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
Usp40Q8BWR4 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
Usp40Q8BWR4 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC25.59■■□□□ 1.69
Usp40Q8BWR4 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Usp40Q8BWR4 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Usp40Q8BWR4 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC25.59■■□□□ 1.69
Usp40Q8BWR4 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
Usp40Q8BWR4 Gm29241-201ENSMUST00000189260 1096 ntBASIC25.59■■□□□ 1.69
Usp40Q8BWR4 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC25.59■■□□□ 1.69
Usp40Q8BWR4 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC25.59■■□□□ 1.69
Usp40Q8BWR4 AC153881.1-201ENSMUST00000214448 284 ntBASIC25.59■■□□□ 1.69
Usp40Q8BWR4 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Usp40Q8BWR4 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC25.59■■□□□ 1.69
Usp40Q8BWR4 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC25.59■■□□□ 1.69
Usp40Q8BWR4 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Usp40Q8BWR4 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
Usp40Q8BWR4 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Usp40Q8BWR4 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Usp40Q8BWR4 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC25.58■■□□□ 1.69
Usp40Q8BWR4 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Usp40Q8BWR4 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
Usp40Q8BWR4 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
Usp40Q8BWR4 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Usp40Q8BWR4 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Usp40Q8BWR4 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC25.58■■□□□ 1.69
Usp40Q8BWR4 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
Usp40Q8BWR4 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC25.58■■□□□ 1.69
Usp40Q8BWR4 Arhgef33-211ENSMUST00000225658 473 ntBASIC25.58■■□□□ 1.69
Usp40Q8BWR4 AC154649.1-201ENSMUST00000227392 384 ntBASIC25.58■■□□□ 1.69
Usp40Q8BWR4 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Usp40Q8BWR4 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Usp40Q8BWR4 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
Usp40Q8BWR4 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
Usp40Q8BWR4 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
Usp40Q8BWR4 Gm22325-201ENSMUST00000158904 308 ntBASIC25.57■■□□□ 1.68
Usp40Q8BWR4 Gm6576-201ENSMUST00000169678 883 ntBASIC25.57■■□□□ 1.68
Usp40Q8BWR4 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Usp40Q8BWR4 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Usp40Q8BWR4 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Usp40Q8BWR4 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Usp40Q8BWR4 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC25.56■■□□□ 1.68
Usp40Q8BWR4 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Usp40Q8BWR4 Gm15378-201ENSMUST00000121894 207 ntBASIC25.56■■□□□ 1.68
Usp40Q8BWR4 AC107452.1-201ENSMUST00000227963 481 ntBASIC25.56■■□□□ 1.68
Usp40Q8BWR4 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC25.56■■□□□ 1.68
Usp40Q8BWR4 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC25.56■■□□□ 1.68
Usp40Q8BWR4 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Usp40Q8BWR4 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Retrieved 100 of 76,532 protein–RNA pairs in 47.8 ms