Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Upf3aQ3ULJ3 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Upf3aQ3ULJ3 CT010444.2-201ENSMUST00000217877 1629 ntBASIC19.64■□□□□ 0.73
Upf3aQ3ULJ3 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Upf3aQ3ULJ3 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Upf3aQ3ULJ3 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Upf3aQ3ULJ3 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC19.64■□□□□ 0.73
Upf3aQ3ULJ3 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Upf3aQ3ULJ3 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Upf3aQ3ULJ3 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Upf3aQ3ULJ3 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Upf3aQ3ULJ3 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Upf3aQ3ULJ3 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Upf3aQ3ULJ3 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC19.63■□□□□ 0.73
Upf3aQ3ULJ3 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC19.63■□□□□ 0.73
Upf3aQ3ULJ3 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC19.63■□□□□ 0.73
Upf3aQ3ULJ3 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC19.63■□□□□ 0.73
Upf3aQ3ULJ3 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Upf3aQ3ULJ3 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Upf3aQ3ULJ3 Gm37055-201ENSMUST00000191866 133 ntBASIC19.63■□□□□ 0.73
Upf3aQ3ULJ3 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Upf3aQ3ULJ3 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Upf3aQ3ULJ3 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Upf3aQ3ULJ3 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Upf3aQ3ULJ3 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Upf3aQ3ULJ3 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Upf3aQ3ULJ3 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Upf3aQ3ULJ3 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Upf3aQ3ULJ3 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Upf3aQ3ULJ3 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Upf3aQ3ULJ3 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Upf3aQ3ULJ3 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Upf3aQ3ULJ3 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Upf3aQ3ULJ3 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Upf3aQ3ULJ3 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Upf3aQ3ULJ3 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
Upf3aQ3ULJ3 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Upf3aQ3ULJ3 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC19.62■□□□□ 0.73
Upf3aQ3ULJ3 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Upf3aQ3ULJ3 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC19.62■□□□□ 0.73
Upf3aQ3ULJ3 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Upf3aQ3ULJ3 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Upf3aQ3ULJ3 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Upf3aQ3ULJ3 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Upf3aQ3ULJ3 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Upf3aQ3ULJ3 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Upf3aQ3ULJ3 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Upf3aQ3ULJ3 Gm15565-201ENSMUST00000118890 427 ntBASIC19.61■□□□□ 0.73
Upf3aQ3ULJ3 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC19.61■□□□□ 0.73
Upf3aQ3ULJ3 Alkbh1-212ENSMUST00000185301 408 ntBASIC19.61■□□□□ 0.73
Upf3aQ3ULJ3 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Upf3aQ3ULJ3 AC107452.1-201ENSMUST00000227963 481 ntBASIC19.61■□□□□ 0.73
Upf3aQ3ULJ3 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Upf3aQ3ULJ3 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Upf3aQ3ULJ3 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Upf3aQ3ULJ3 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Upf3aQ3ULJ3 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Upf3aQ3ULJ3 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Upf3aQ3ULJ3 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
Upf3aQ3ULJ3 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC19.6■□□□□ 0.73
Upf3aQ3ULJ3 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Upf3aQ3ULJ3 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC19.6■□□□□ 0.73
Upf3aQ3ULJ3 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Upf3aQ3ULJ3 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Upf3aQ3ULJ3 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Upf3aQ3ULJ3 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC19.6■□□□□ 0.73
Upf3aQ3ULJ3 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Upf3aQ3ULJ3 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Upf3aQ3ULJ3 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Upf3aQ3ULJ3 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Upf3aQ3ULJ3 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
Upf3aQ3ULJ3 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Upf3aQ3ULJ3 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Upf3aQ3ULJ3 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Upf3aQ3ULJ3 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Upf3aQ3ULJ3 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Upf3aQ3ULJ3 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Upf3aQ3ULJ3 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Upf3aQ3ULJ3 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
Upf3aQ3ULJ3 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
Upf3aQ3ULJ3 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
Upf3aQ3ULJ3 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Upf3aQ3ULJ3 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Upf3aQ3ULJ3 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC19.58■□□□□ 0.72
Upf3aQ3ULJ3 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Upf3aQ3ULJ3 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
Upf3aQ3ULJ3 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Upf3aQ3ULJ3 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
Upf3aQ3ULJ3 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Upf3aQ3ULJ3 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Upf3aQ3ULJ3 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC19.57■□□□□ 0.72
Upf3aQ3ULJ3 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC19.57■□□□□ 0.72
Upf3aQ3ULJ3 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Upf3aQ3ULJ3 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Upf3aQ3ULJ3 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Upf3aQ3ULJ3 Gm8309-201ENSMUST00000206627 1448 ntBASIC19.57■□□□□ 0.72
Upf3aQ3ULJ3 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Upf3aQ3ULJ3 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Upf3aQ3ULJ3 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Upf3aQ3ULJ3 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 18.8 ms