Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Clk3O35492 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Clk3O35492 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Clk3O35492 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Clk3O35492 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Clk3O35492 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Clk3O35492 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Clk3O35492 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Clk3O35492 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Clk3O35492 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Clk3O35492 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Clk3O35492 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC17.67■□□□□ 0.42
Clk3O35492 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Clk3O35492 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Clk3O35492 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Clk3O35492 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Clk3O35492 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Clk3O35492 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC17.67■□□□□ 0.42
Clk3O35492 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC17.67■□□□□ 0.42
Clk3O35492 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Clk3O35492 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Clk3O35492 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Clk3O35492 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Clk3O35492 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC17.66■□□□□ 0.42
Clk3O35492 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clk3O35492 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clk3O35492 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clk3O35492 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clk3O35492 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clk3O35492 Gm5540-201ENSMUST00000131852 1848 ntBASIC17.66■□□□□ 0.42
Clk3O35492 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clk3O35492 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC17.66■□□□□ 0.42
Clk3O35492 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Clk3O35492 Gm27801-201ENSMUST00000184174 223 ntBASIC17.66■□□□□ 0.42
Clk3O35492 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC17.66■□□□□ 0.42
Clk3O35492 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC17.66■□□□□ 0.42
Clk3O35492 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC17.66■□□□□ 0.42
Clk3O35492 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clk3O35492 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clk3O35492 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Clk3O35492 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clk3O35492 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clk3O35492 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC17.66■□□□□ 0.42
Clk3O35492 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Clk3O35492 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
Clk3O35492 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clk3O35492 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Clk3O35492 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clk3O35492 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clk3O35492 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clk3O35492 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clk3O35492 Dmtn-210ENSMUST00000228824 2377 ntBASIC17.66■□□□□ 0.42
Clk3O35492 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clk3O35492 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clk3O35492 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Clk3O35492 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Clk3O35492 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Clk3O35492 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Clk3O35492 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Clk3O35492 Gm42900-201ENSMUST00000197184 2167 ntBASIC17.65■□□□□ 0.42
Clk3O35492 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Clk3O35492 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Clk3O35492 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Clk3O35492 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Clk3O35492 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Clk3O35492 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC17.65■□□□□ 0.42
Clk3O35492 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Clk3O35492 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Clk3O35492 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Clk3O35492 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
Clk3O35492 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Clk3O35492 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Clk3O35492 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
Clk3O35492 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
Clk3O35492 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Clk3O35492 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Clk3O35492 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Clk3O35492 Gm2011-201ENSMUST00000203124 1263 ntBASIC17.64■□□□□ 0.41
Clk3O35492 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Clk3O35492 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Clk3O35492 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Clk3O35492 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC17.64■□□□□ 0.41
Clk3O35492 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Clk3O35492 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
Clk3O35492 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Clk3O35492 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Clk3O35492 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Clk3O35492 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Clk3O35492 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Clk3O35492 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Clk3O35492 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Clk3O35492 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Clk3O35492 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC17.63■□□□□ 0.41
Clk3O35492 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC17.63■□□□□ 0.41
Clk3O35492 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Clk3O35492 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Clk3O35492 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Clk3O35492 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Clk3O35492 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Clk3O35492 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC17.63■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 15.7 ms