Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Kctd16-201ENSMUST00000091927 1349 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
Hmgb3O54879 Gm32647-202ENSMUST00000206579 3147 ntTSL 3 BASIC6.25□□□□□ -1.41
Hmgb3O54879 Uba1y-202ENSMUST00000190013 3441 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
Hmgb3O54879 Clnk-201ENSMUST00000169819 1700 ntAPPRIS P2 TSL 1 (best) BASIC6.25□□□□□ -1.41
Hmgb3O54879 Clnk-202ENSMUST00000171633 1700 ntAPPRIS ALT2 TSL 5 BASIC6.25□□□□□ -1.41
Hmgb3O54879 Slitrk2-201ENSMUST00000036043 2992 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
Hmgb3O54879 4930545L23Rik-201ENSMUST00000138303 2502 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
Hmgb3O54879 Prokr2-201ENSMUST00000049997 4486 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
Hmgb3O54879 Gm37786-201ENSMUST00000191714 3225 ntBASIC6.25□□□□□ -1.41
Hmgb3O54879 Adgre1-202ENSMUST00000086763 3245 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
Hmgb3O54879 Pkhd1-201ENSMUST00000088448 12935 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
Hmgb3O54879 Vmn1r220-202ENSMUST00000226651 6252 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
Hmgb3O54879 Cenpx-204ENSMUST00000106155 700 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
Hmgb3O54879 Cd59b-203ENSMUST00000111131 555 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
Hmgb3O54879 Gm12470-201ENSMUST00000117239 1049 ntBASIC6.25□□□□□ -1.41
Hmgb3O54879 Gm9392-201ENSMUST00000119337 554 ntBASIC6.25□□□□□ -1.41
Hmgb3O54879 Gm15028-201ENSMUST00000120295 370 ntBASIC6.25□□□□□ -1.41
Hmgb3O54879 Rps14-203ENSMUST00000122279 667 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
Hmgb3O54879 Gm15646-201ENSMUST00000143317 766 ntTSL 5 BASIC6.25□□□□□ -1.41
Hmgb3O54879 Gm17188-202ENSMUST00000165178 680 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
Hmgb3O54879 Gm4302-201ENSMUST00000168769 927 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
Hmgb3O54879 Gm17572-201ENSMUST00000171455 420 ntBASIC6.25□□□□□ -1.41
Hmgb3O54879 Vmn2r-ps41-201ENSMUST00000173587 980 ntBASIC6.25□□□□□ -1.41
Hmgb3O54879 Gm2026-203ENSMUST00000174416 532 ntTSL 3 BASIC6.25□□□□□ -1.41
Hmgb3O54879 Gm22132-201ENSMUST00000175316 100 ntBASIC6.25□□□□□ -1.41
Hmgb3O54879 4930438E09Rik-201ENSMUST00000176841 776 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
Hmgb3O54879 1700009J07Rik-201ENSMUST00000178996 912 ntTSL 5 BASIC6.25□□□□□ -1.41
Hmgb3O54879 4933406F09Rik-202ENSMUST00000180508 680 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
Hmgb3O54879 Gm7577-201ENSMUST00000182543 982 ntBASIC6.25□□□□□ -1.41
Hmgb3O54879 Gm27199-201ENSMUST00000185026 623 ntTSL 2 BASIC6.25□□□□□ -1.41
Hmgb3O54879 Arhgap26-218ENSMUST00000187912 312 ntTSL 5 BASIC6.25□□□□□ -1.41
Hmgb3O54879 Gm18797-201ENSMUST00000190809 1174 ntBASIC6.25□□□□□ -1.41
Hmgb3O54879 Gm2474-201ENSMUST00000195162 559 ntBASIC6.25□□□□□ -1.41
Hmgb3O54879 1700081B01Rik-202ENSMUST00000197543 648 ntTSL 3 BASIC6.25□□□□□ -1.41
Hmgb3O54879 Gm31172-201ENSMUST00000210068 321 ntTSL 3 BASIC6.25□□□□□ -1.41
Hmgb3O54879 Gm45353-201ENSMUST00000210581 252 ntTSL 5 BASIC6.25□□□□□ -1.41
Hmgb3O54879 Gm18783-201ENSMUST00000220465 1151 ntBASIC6.25□□□□□ -1.41
Hmgb3O54879 Gm18114-201ENSMUST00000221780 523 ntBASIC6.25□□□□□ -1.41
Hmgb3O54879 Nqo2-204ENSMUST00000222740 995 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
Hmgb3O54879 AC131100.1-201ENSMUST00000226328 470 ntBASIC6.25□□□□□ -1.41
Hmgb3O54879 Borcs8-201ENSMUST00000002418 810 ntAPPRIS P3 TSL 1 (best) BASIC6.25□□□□□ -1.41
Hmgb3O54879 Cenpx-202ENSMUST00000055424 606 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
Hmgb3O54879 Rnase1-201ENSMUST00000080126 992 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
Hmgb3O54879 Olfr1259-201ENSMUST00000090695 930 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
Hmgb3O54879 Zfp120-202ENSMUST00000094538 1245 ntAPPRIS ALT2 TSL 5 BASIC6.25□□□□□ -1.41
Hmgb3O54879 Gm31410-201ENSMUST00000217302 4048 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
Hmgb3O54879 Phc1-208ENSMUST00000160696 4213 ntAPPRIS P3 TSL 1 (best) BASIC6.25□□□□□ -1.41
Hmgb3O54879 Serpina1f-201ENSMUST00000021490 1569 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
Hmgb3O54879 Zscan4b-202ENSMUST00000210847 1779 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
Hmgb3O54879 Gm20731-201ENSMUST00000193462 2288 ntBASIC6.25□□□□□ -1.41
Hmgb3O54879 Gm44652-201ENSMUST00000208648 2854 ntBASIC6.25□□□□□ -1.41
Hmgb3O54879 Senp6-203ENSMUST00000165607 3495 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
Hmgb3O54879 Gm15462-201ENSMUST00000133653 4580 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
Hmgb3O54879 Adgrl3-207ENSMUST00000118078 4871 ntTSL 5 BASIC6.25□□□□□ -1.41
Hmgb3O54879 Lmbrd2-204ENSMUST00000227556 8099 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
Hmgb3O54879 Gm43970-201ENSMUST00000204346 3605 ntBASIC6.25□□□□□ -1.41
Hmgb3O54879 Gm10143-202ENSMUST00000150038 3332 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
Hmgb3O54879 Gm43251-201ENSMUST00000198339 2712 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
Hmgb3O54879 Gm44101-201ENSMUST00000203951 2221 ntBASIC6.25□□□□□ -1.41
Hmgb3O54879 Gm28583-201ENSMUST00000188903 2141 ntBASIC6.25□□□□□ -1.41
Hmgb3O54879 Pira2-202ENSMUST00000119469 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
Hmgb3O54879 Gm14144-201ENSMUST00000128602 1721 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
Hmgb3O54879 4930442J19Rik-202ENSMUST00000157058 1721 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
Hmgb3O54879 Gm3591-201ENSMUST00000164408 1745 ntAPPRIS P5 TSL 5 BASIC6.25□□□□□ -1.41
Hmgb3O54879 Tbxas1-206ENSMUST00000162521 1427 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
Hmgb3O54879 Gm16427-201ENSMUST00000179091 1449 ntAPPRIS ALT2 TSL 5 BASIC6.25□□□□□ -1.41
Hmgb3O54879 Raet1d-202ENSMUST00000182677 1425 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
Hmgb3O54879 4930456G14Rik-201ENSMUST00000193054 1330 ntBASIC6.25□□□□□ -1.41
Hmgb3O54879 Gm42766-201ENSMUST00000200233 1332 ntBASIC6.25□□□□□ -1.41
Hmgb3O54879 9230102K24Rik-201ENSMUST00000219459 1303 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
Hmgb3O54879 Fgf1-201ENSMUST00000040647 3981 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
Hmgb3O54879 Vmn1r173-203ENSMUST00000227987 9233 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
Hmgb3O54879 Gm43019-201ENSMUST00000196948 2863 ntBASIC6.24□□□□□ -1.41
Hmgb3O54879 Tdrkh-204ENSMUST00000196606 2586 ntAPPRIS ALT2 TSL 5 BASIC6.24□□□□□ -1.41
Hmgb3O54879 Myo1h-205ENSMUST00000169347 3545 ntAPPRIS ALT2 TSL 5 BASIC6.24□□□□□ -1.41
Hmgb3O54879 Nt5c1b-220ENSMUST00000223534 1798 ntAPPRIS ALT2 TSL 5 BASIC6.24□□□□□ -1.41
Hmgb3O54879 Frem2-201ENSMUST00000091137 12348 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
Hmgb3O54879 Sos2-203ENSMUST00000182396 3963 ntTSL 5 BASIC6.24□□□□□ -1.41
Hmgb3O54879 Cd247-208ENSMUST00000178336 2807 ntTSL 5 BASIC6.24□□□□□ -1.41
Hmgb3O54879 Gm6509-202ENSMUST00000201552 1582 ntAPPRIS P1 TSL 5 BASIC6.24□□□□□ -1.41
Hmgb3O54879 Olfr2-205ENSMUST00000214105 5798 ntAPPRIS P1 TSL 5 BASIC6.24□□□□□ -1.41
Hmgb3O54879 Ermard-204ENSMUST00000097395 1593 ntAPPRIS ALT2 TSL 5 BASIC6.24□□□□□ -1.41
Hmgb3O54879 Klf7-202ENSMUST00000114086 7662 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
Hmgb3O54879 Dst-215ENSMUST00000185269 16340 ntTSL 5 BASIC6.24□□□□□ -1.41
Hmgb3O54879 Fancd2os-201ENSMUST00000035870 1358 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
Hmgb3O54879 Gpr165-201ENSMUST00000033554 3170 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
Hmgb3O54879 Samd12-201ENSMUST00000078673 9019 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
Hmgb3O54879 Gm22760-201ENSMUST00000102277 93 ntBASIC6.24□□□□□ -1.41
Hmgb3O54879 Inca1-204ENSMUST00000108543 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
Hmgb3O54879 Ap5s1-202ENSMUST00000110206 703 ntTSL 3 BASIC6.24□□□□□ -1.41
Hmgb3O54879 Zfp467-207ENSMUST00000114563 463 ntTSL 5 BASIC6.24□□□□□ -1.41
Hmgb3O54879 Gm15626-201ENSMUST00000117478 868 ntBASIC6.24□□□□□ -1.41
Hmgb3O54879 Gm12310-201ENSMUST00000118013 492 ntBASIC6.24□□□□□ -1.41
Hmgb3O54879 Gm12098-201ENSMUST00000118277 508 ntBASIC6.24□□□□□ -1.41
Hmgb3O54879 Gm11225-201ENSMUST00000118903 1049 ntBASIC6.24□□□□□ -1.41
Hmgb3O54879 Gm14824-201ENSMUST00000119421 737 ntBASIC6.24□□□□□ -1.41
Hmgb3O54879 Gm11676-201ENSMUST00000120443 490 ntBASIC6.24□□□□□ -1.41
Hmgb3O54879 Gm16077-201ENSMUST00000121915 655 ntBASIC6.24□□□□□ -1.41
Hmgb3O54879 Ino80c-202ENSMUST00000125169 756 ntTSL 3 BASIC6.24□□□□□ -1.41
Hmgb3O54879 Pla2g2a-203ENSMUST00000135748 788 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
Retrieved 100 of 76,532 protein–RNA pairs in 48.8 ms