Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC22.4■■□□□ 1.18
Scn11aQ9R053 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
Scn11aQ9R053 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
Scn11aQ9R053 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
Scn11aQ9R053 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
Scn11aQ9R053 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
Scn11aQ9R053 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Scn11aQ9R053 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC22.39■■□□□ 1.17
Scn11aQ9R053 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Scn11aQ9R053 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.17
Scn11aQ9R053 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Scn11aQ9R053 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Scn11aQ9R053 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
Scn11aQ9R053 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Scn11aQ9R053 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Scn11aQ9R053 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Scn11aQ9R053 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
Scn11aQ9R053 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC22.38■■□□□ 1.17
Scn11aQ9R053 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC22.38■■□□□ 1.17
Scn11aQ9R053 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
Scn11aQ9R053 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Scn11aQ9R053 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Scn11aQ9R053 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC22.38■■□□□ 1.17
Scn11aQ9R053 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Scn11aQ9R053 Gm37055-201ENSMUST00000191866 133 ntBASIC22.38■■□□□ 1.17
Scn11aQ9R053 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC22.37■■□□□ 1.17
Scn11aQ9R053 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC22.37■■□□□ 1.17
Scn11aQ9R053 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Scn11aQ9R053 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Scn11aQ9R053 Gm11927-201ENSMUST00000118472 759 ntBASIC22.37■■□□□ 1.17
Scn11aQ9R053 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Scn11aQ9R053 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Scn11aQ9R053 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Scn11aQ9R053 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC22.36■■□□□ 1.17
Scn11aQ9R053 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
Scn11aQ9R053 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
Scn11aQ9R053 Alkbh1-212ENSMUST00000185301 408 ntBASIC22.36■■□□□ 1.17
Scn11aQ9R053 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Scn11aQ9R053 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Scn11aQ9R053 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
Scn11aQ9R053 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
Scn11aQ9R053 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Scn11aQ9R053 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
Scn11aQ9R053 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Scn11aQ9R053 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC22.35■■□□□ 1.17
Scn11aQ9R053 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
Scn11aQ9R053 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Scn11aQ9R053 Gm13158-201ENSMUST00000122007 736 ntBASIC22.35■■□□□ 1.17
Scn11aQ9R053 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC22.35■■□□□ 1.17
Scn11aQ9R053 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Scn11aQ9R053 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
Scn11aQ9R053 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Scn11aQ9R053 Arhgef33-211ENSMUST00000225658 473 ntBASIC22.35■■□□□ 1.17
Scn11aQ9R053 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC22.35■■□□□ 1.17
Scn11aQ9R053 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC22.35■■□□□ 1.17
Scn11aQ9R053 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Scn11aQ9R053 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Scn11aQ9R053 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Scn11aQ9R053 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC22.34■■□□□ 1.17
Scn11aQ9R053 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC22.34■■□□□ 1.17
Scn11aQ9R053 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC22.34■■□□□ 1.17
Scn11aQ9R053 Gm9484-201ENSMUST00000195892 1159 ntBASIC22.34■■□□□ 1.17
Scn11aQ9R053 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC22.34■■□□□ 1.17
Scn11aQ9R053 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
Scn11aQ9R053 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Scn11aQ9R053 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
Scn11aQ9R053 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC22.34■■□□□ 1.17
Scn11aQ9R053 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Scn11aQ9R053 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Scn11aQ9R053 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC22.33■■□□□ 1.16
Scn11aQ9R053 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
Scn11aQ9R053 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
Scn11aQ9R053 Gm37805-201ENSMUST00000192612 1094 ntBASIC22.33■■□□□ 1.16
Scn11aQ9R053 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Scn11aQ9R053 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Scn11aQ9R053 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
Scn11aQ9R053 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC22.32■■□□□ 1.16
Scn11aQ9R053 AC121577.1-201ENSMUST00000227302 707 ntBASIC22.32■■□□□ 1.16
Scn11aQ9R053 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Scn11aQ9R053 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Scn11aQ9R053 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Scn11aQ9R053 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
Scn11aQ9R053 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
Scn11aQ9R053 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Scn11aQ9R053 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
Scn11aQ9R053 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC22.31■■□□□ 1.16
Scn11aQ9R053 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
Scn11aQ9R053 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Scn11aQ9R053 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
Scn11aQ9R053 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Scn11aQ9R053 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Scn11aQ9R053 Gm15853-202ENSMUST00000195518 2041 ntBASIC22.31■■□□□ 1.16
Scn11aQ9R053 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC22.3■■□□□ 1.16
Scn11aQ9R053 AL672049.1-201ENSMUST00000197943 91 ntBASIC22.3■■□□□ 1.16
Scn11aQ9R053 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Scn11aQ9R053 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Scn11aQ9R053 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
Scn11aQ9R053 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Scn11aQ9R053 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Scn11aQ9R053 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Retrieved 100 of 76,532 protein–RNA pairs in 18.1 ms