Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Snrnp40Q6PE01 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC16.5■□□□□ 0.23
Snrnp40Q6PE01 AC107452.1-201ENSMUST00000227963 481 ntBASIC16.5■□□□□ 0.23
Snrnp40Q6PE01 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Snrnp40Q6PE01 Gm5417-201ENSMUST00000079706 384 ntBASIC16.5■□□□□ 0.23
Snrnp40Q6PE01 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Snrnp40Q6PE01 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Snrnp40Q6PE01 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Snrnp40Q6PE01 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Snrnp40Q6PE01 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Snrnp40Q6PE01 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC16.49■□□□□ 0.23
Snrnp40Q6PE01 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC16.49■□□□□ 0.23
Snrnp40Q6PE01 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Snrnp40Q6PE01 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Snrnp40Q6PE01 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
Snrnp40Q6PE01 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC16.49■□□□□ 0.23
Snrnp40Q6PE01 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
Snrnp40Q6PE01 Alkbh1-212ENSMUST00000185301 408 ntBASIC16.49■□□□□ 0.23
Snrnp40Q6PE01 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Snrnp40Q6PE01 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Snrnp40Q6PE01 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Snrnp40Q6PE01 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Snrnp40Q6PE01 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Snrnp40Q6PE01 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Snrnp40Q6PE01 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Snrnp40Q6PE01 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Snrnp40Q6PE01 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Snrnp40Q6PE01 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Snrnp40Q6PE01 Gm6433-201ENSMUST00000118634 875 ntBASIC16.48■□□□□ 0.23
Snrnp40Q6PE01 Wnt10b-205ENSMUST00000226846 1204 ntBASIC16.48■□□□□ 0.23
Snrnp40Q6PE01 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
Snrnp40Q6PE01 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Snrnp40Q6PE01 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Snrnp40Q6PE01 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Snrnp40Q6PE01 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Snrnp40Q6PE01 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Snrnp40Q6PE01 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Snrnp40Q6PE01 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Snrnp40Q6PE01 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Snrnp40Q6PE01 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
Snrnp40Q6PE01 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Snrnp40Q6PE01 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Snrnp40Q6PE01 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC16.47■□□□□ 0.23
Snrnp40Q6PE01 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Snrnp40Q6PE01 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Snrnp40Q6PE01 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC16.47■□□□□ 0.23
Snrnp40Q6PE01 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC16.47■□□□□ 0.23
Snrnp40Q6PE01 Gm43799-201ENSMUST00000201845 579 ntBASIC16.47■□□□□ 0.23
Snrnp40Q6PE01 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Snrnp40Q6PE01 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Snrnp40Q6PE01 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Snrnp40Q6PE01 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Snrnp40Q6PE01 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Snrnp40Q6PE01 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Snrnp40Q6PE01 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Snrnp40Q6PE01 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Snrnp40Q6PE01 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Snrnp40Q6PE01 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Snrnp40Q6PE01 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Snrnp40Q6PE01 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Snrnp40Q6PE01 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC16.46■□□□□ 0.23
Snrnp40Q6PE01 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Snrnp40Q6PE01 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Snrnp40Q6PE01 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Snrnp40Q6PE01 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Snrnp40Q6PE01 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
Snrnp40Q6PE01 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Snrnp40Q6PE01 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Snrnp40Q6PE01 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Snrnp40Q6PE01 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Snrnp40Q6PE01 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC16.45■□□□□ 0.22
Snrnp40Q6PE01 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Snrnp40Q6PE01 Gm10231-201ENSMUST00000181584 441 ntBASIC16.45■□□□□ 0.22
Snrnp40Q6PE01 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Snrnp40Q6PE01 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC16.45■□□□□ 0.22
Snrnp40Q6PE01 Gm10175-202ENSMUST00000208752 441 ntBASIC16.45■□□□□ 0.22
Snrnp40Q6PE01 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Snrnp40Q6PE01 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Snrnp40Q6PE01 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Snrnp40Q6PE01 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Snrnp40Q6PE01 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Snrnp40Q6PE01 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Snrnp40Q6PE01 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Snrnp40Q6PE01 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Snrnp40Q6PE01 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Snrnp40Q6PE01 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Snrnp40Q6PE01 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Snrnp40Q6PE01 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Snrnp40Q6PE01 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
Snrnp40Q6PE01 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Snrnp40Q6PE01 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Snrnp40Q6PE01 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Snrnp40Q6PE01 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Snrnp40Q6PE01 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Snrnp40Q6PE01 Gm6277-202ENSMUST00000224036 2779 ntBASIC16.43■□□□□ 0.22
Snrnp40Q6PE01 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Snrnp40Q6PE01 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Snrnp40Q6PE01 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Snrnp40Q6PE01 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Snrnp40Q6PE01 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms