Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Usp49Q6P9L4 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Usp49Q6P9L4 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Usp49Q6P9L4 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Usp49Q6P9L4 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Usp49Q6P9L4 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC20.97■□□□□ 0.95
Usp49Q6P9L4 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Usp49Q6P9L4 Gm10493-201ENSMUST00000097270 612 ntBASIC20.97■□□□□ 0.95
Usp49Q6P9L4 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Usp49Q6P9L4 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Usp49Q6P9L4 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC20.97■□□□□ 0.95
Usp49Q6P9L4 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Usp49Q6P9L4 Gm5953-201ENSMUST00000220644 2616 ntBASIC20.96■□□□□ 0.95
Usp49Q6P9L4 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Usp49Q6P9L4 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
Usp49Q6P9L4 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC20.96■□□□□ 0.95
Usp49Q6P9L4 Gm13534-201ENSMUST00000121169 513 ntBASIC20.96■□□□□ 0.95
Usp49Q6P9L4 Gm18284-201ENSMUST00000172604 624 ntBASIC20.96■□□□□ 0.95
Usp49Q6P9L4 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC20.96■□□□□ 0.95
Usp49Q6P9L4 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC20.96■□□□□ 0.95
Usp49Q6P9L4 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Usp49Q6P9L4 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Usp49Q6P9L4 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Usp49Q6P9L4 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Usp49Q6P9L4 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.95
Usp49Q6P9L4 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Usp49Q6P9L4 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Usp49Q6P9L4 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC20.95■□□□□ 0.94
Usp49Q6P9L4 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC20.95■□□□□ 0.94
Usp49Q6P9L4 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
Usp49Q6P9L4 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Usp49Q6P9L4 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Usp49Q6P9L4 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Usp49Q6P9L4 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Usp49Q6P9L4 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Usp49Q6P9L4 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Usp49Q6P9L4 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC20.94■□□□□ 0.94
Usp49Q6P9L4 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC20.94■□□□□ 0.94
Usp49Q6P9L4 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Usp49Q6P9L4 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Usp49Q6P9L4 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Usp49Q6P9L4 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC20.94■□□□□ 0.94
Usp49Q6P9L4 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Usp49Q6P9L4 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Usp49Q6P9L4 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Usp49Q6P9L4 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Usp49Q6P9L4 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Usp49Q6P9L4 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Usp49Q6P9L4 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Usp49Q6P9L4 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Usp49Q6P9L4 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Usp49Q6P9L4 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Usp49Q6P9L4 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp49Q6P9L4 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Usp49Q6P9L4 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp49Q6P9L4 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp49Q6P9L4 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
Usp49Q6P9L4 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC20.93■□□□□ 0.94
Usp49Q6P9L4 AC099934.2-201ENSMUST00000196389 70 ntBASIC20.93■□□□□ 0.94
Usp49Q6P9L4 AC156953.1-201ENSMUST00000196953 70 ntBASIC20.93■□□□□ 0.94
Usp49Q6P9L4 AC157822.2-201ENSMUST00000200291 70 ntBASIC20.93■□□□□ 0.94
Usp49Q6P9L4 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp49Q6P9L4 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp49Q6P9L4 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Usp49Q6P9L4 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp49Q6P9L4 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Usp49Q6P9L4 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Usp49Q6P9L4 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC20.92■□□□□ 0.94
Usp49Q6P9L4 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp49Q6P9L4 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Usp49Q6P9L4 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp49Q6P9L4 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Usp49Q6P9L4 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp49Q6P9L4 Gm42922-201ENSMUST00000195887 2078 ntBASIC20.92■□□□□ 0.94
Usp49Q6P9L4 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp49Q6P9L4 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp49Q6P9L4 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp49Q6P9L4 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp49Q6P9L4 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Usp49Q6P9L4 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp49Q6P9L4 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp49Q6P9L4 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC20.91■□□□□ 0.94
Usp49Q6P9L4 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Usp49Q6P9L4 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC20.91■□□□□ 0.94
Usp49Q6P9L4 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp49Q6P9L4 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC20.91■□□□□ 0.94
Usp49Q6P9L4 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp49Q6P9L4 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp49Q6P9L4 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp49Q6P9L4 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp49Q6P9L4 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC20.91■□□□□ 0.94
Usp49Q6P9L4 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp49Q6P9L4 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
Usp49Q6P9L4 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Usp49Q6P9L4 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp49Q6P9L4 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp49Q6P9L4 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Usp49Q6P9L4 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp49Q6P9L4 Gm7856-201ENSMUST00000117514 1493 ntBASIC20.9■□□□□ 0.94
Usp49Q6P9L4 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms