Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usf1Q61069 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usf1Q61069 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
Usf1Q61069 Gm10231-201ENSMUST00000181584 441 ntBASIC17.05■□□□□ 0.32
Usf1Q61069 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usf1Q61069 Gm43799-201ENSMUST00000201845 579 ntBASIC17.05■□□□□ 0.32
Usf1Q61069 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Usf1Q61069 Gm10175-202ENSMUST00000208752 441 ntBASIC17.05■□□□□ 0.32
Usf1Q61069 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usf1Q61069 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usf1Q61069 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Usf1Q61069 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usf1Q61069 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usf1Q61069 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usf1Q61069 Flg-201ENSMUST00000050758 1488 ntBASIC17.05■□□□□ 0.32
Usf1Q61069 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usf1Q61069 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usf1Q61069 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usf1Q61069 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Usf1Q61069 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usf1Q61069 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usf1Q61069 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usf1Q61069 Gm20100-201ENSMUST00000209418 2272 ntBASIC17.04■□□□□ 0.32
Usf1Q61069 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Usf1Q61069 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC17.04■□□□□ 0.32
Usf1Q61069 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usf1Q61069 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usf1Q61069 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usf1Q61069 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Usf1Q61069 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Usf1Q61069 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC17.04■□□□□ 0.32
Usf1Q61069 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usf1Q61069 AC107452.1-201ENSMUST00000227963 481 ntBASIC17.04■□□□□ 0.32
Usf1Q61069 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usf1Q61069 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usf1Q61069 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usf1Q61069 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Usf1Q61069 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usf1Q61069 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Usf1Q61069 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Usf1Q61069 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usf1Q61069 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Usf1Q61069 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC17.03■□□□□ 0.32
Usf1Q61069 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usf1Q61069 Alkbh1-212ENSMUST00000185301 408 ntBASIC17.03■□□□□ 0.32
Usf1Q61069 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Usf1Q61069 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usf1Q61069 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
Usf1Q61069 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usf1Q61069 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usf1Q61069 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Usf1Q61069 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Usf1Q61069 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Usf1Q61069 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Usf1Q61069 Gm11927-201ENSMUST00000118472 759 ntBASIC17.02■□□□□ 0.32
Usf1Q61069 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
Usf1Q61069 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Usf1Q61069 Snhg20-203ENSMUST00000182811 2153 ntBASIC17.02■□□□□ 0.31
Usf1Q61069 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC17.02■□□□□ 0.31
Usf1Q61069 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Usf1Q61069 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Usf1Q61069 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC17.02■□□□□ 0.31
Usf1Q61069 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Usf1Q61069 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Usf1Q61069 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Usf1Q61069 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Usf1Q61069 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
Usf1Q61069 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Usf1Q61069 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
Usf1Q61069 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Usf1Q61069 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Usf1Q61069 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Usf1Q61069 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Usf1Q61069 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Usf1Q61069 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Usf1Q61069 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC17.01■□□□□ 0.31
Usf1Q61069 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC17.01■□□□□ 0.31
Usf1Q61069 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Usf1Q61069 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Usf1Q61069 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Usf1Q61069 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Usf1Q61069 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Usf1Q61069 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Usf1Q61069 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Usf1Q61069 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Usf1Q61069 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Usf1Q61069 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Usf1Q61069 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Usf1Q61069 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC17■□□□□ 0.31
Usf1Q61069 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Usf1Q61069 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC17■□□□□ 0.31
Usf1Q61069 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
Usf1Q61069 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC17■□□□□ 0.31
Usf1Q61069 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC17■□□□□ 0.31
Usf1Q61069 Wnt10b-205ENSMUST00000226846 1204 ntBASIC17■□□□□ 0.31
Usf1Q61069 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Usf1Q61069 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
Usf1Q61069 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Usf1Q61069 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Usf1Q61069 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 21.8 ms