Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC30.69■■■□□ 2.5
Ccdc88bQ4QRL3 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Ccdc88bQ4QRL3 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC30.69■■■□□ 2.5
Ccdc88bQ4QRL3 Gm11927-201ENSMUST00000118472 759 ntBASIC30.69■■■□□ 2.5
Ccdc88bQ4QRL3 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
Ccdc88bQ4QRL3 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
Ccdc88bQ4QRL3 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC30.68■■■□□ 2.5
Ccdc88bQ4QRL3 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Ccdc88bQ4QRL3 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Ccdc88bQ4QRL3 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Ccdc88bQ4QRL3 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC30.67■■■□□ 2.5
Ccdc88bQ4QRL3 Nrn1-203ENSMUST00000223611 1443 ntBASIC30.67■■■□□ 2.5
Ccdc88bQ4QRL3 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
Ccdc88bQ4QRL3 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
Ccdc88bQ4QRL3 Alkbh1-212ENSMUST00000185301 408 ntBASIC30.67■■■□□ 2.5
Ccdc88bQ4QRL3 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC30.67■■■□□ 2.5
Ccdc88bQ4QRL3 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC30.67■■■□□ 2.5
Ccdc88bQ4QRL3 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
Ccdc88bQ4QRL3 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC30.67■■■□□ 2.5
Ccdc88bQ4QRL3 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
Ccdc88bQ4QRL3 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC30.66■■■□□ 2.5
Ccdc88bQ4QRL3 Gm18666-201ENSMUST00000190039 958 ntBASIC30.66■■■□□ 2.5
Ccdc88bQ4QRL3 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
Ccdc88bQ4QRL3 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC30.66■■■□□ 2.5
Ccdc88bQ4QRL3 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
Ccdc88bQ4QRL3 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
Ccdc88bQ4QRL3 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Ccdc88bQ4QRL3 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Ccdc88bQ4QRL3 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC30.65■■■□□ 2.5
Ccdc88bQ4QRL3 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC30.65■■■□□ 2.5
Ccdc88bQ4QRL3 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC30.65■■■□□ 2.5
Ccdc88bQ4QRL3 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Ccdc88bQ4QRL3 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Ccdc88bQ4QRL3 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Ccdc88bQ4QRL3 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC30.65■■■□□ 2.5
Ccdc88bQ4QRL3 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Ccdc88bQ4QRL3 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
Ccdc88bQ4QRL3 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC30.65■■■□□ 2.5
Ccdc88bQ4QRL3 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
Ccdc88bQ4QRL3 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC30.65■■■□□ 2.5
Ccdc88bQ4QRL3 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC30.64■■■□□ 2.5
Ccdc88bQ4QRL3 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
Ccdc88bQ4QRL3 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC30.64■■■□□ 2.5
Ccdc88bQ4QRL3 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
Ccdc88bQ4QRL3 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
Ccdc88bQ4QRL3 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
Ccdc88bQ4QRL3 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
Ccdc88bQ4QRL3 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.49
Ccdc88bQ4QRL3 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.49
Ccdc88bQ4QRL3 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC30.63■■■□□ 2.49
Ccdc88bQ4QRL3 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
Ccdc88bQ4QRL3 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
Ccdc88bQ4QRL3 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
Ccdc88bQ4QRL3 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
Ccdc88bQ4QRL3 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC30.63■■■□□ 2.49
Ccdc88bQ4QRL3 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC30.63■■■□□ 2.49
Ccdc88bQ4QRL3 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
Ccdc88bQ4QRL3 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC30.63■■■□□ 2.49
Ccdc88bQ4QRL3 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
Ccdc88bQ4QRL3 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC30.63■■■□□ 2.49
Ccdc88bQ4QRL3 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
Ccdc88bQ4QRL3 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
Ccdc88bQ4QRL3 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC30.63■■■□□ 2.49
Ccdc88bQ4QRL3 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
Ccdc88bQ4QRL3 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
Ccdc88bQ4QRL3 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC30.63■■■□□ 2.49
Ccdc88bQ4QRL3 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC30.62■■■□□ 2.49
Ccdc88bQ4QRL3 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
Ccdc88bQ4QRL3 Gm715-201ENSMUST00000117865 831 ntBASIC30.62■■■□□ 2.49
Ccdc88bQ4QRL3 Gm13158-201ENSMUST00000122007 736 ntBASIC30.62■■■□□ 2.49
Ccdc88bQ4QRL3 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC30.62■■■□□ 2.49
Ccdc88bQ4QRL3 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
Ccdc88bQ4QRL3 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC30.62■■■□□ 2.49
Ccdc88bQ4QRL3 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
Ccdc88bQ4QRL3 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC30.61■■■□□ 2.49
Ccdc88bQ4QRL3 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
Ccdc88bQ4QRL3 Gm9484-201ENSMUST00000195892 1159 ntBASIC30.61■■■□□ 2.49
Ccdc88bQ4QRL3 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
Ccdc88bQ4QRL3 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Ccdc88bQ4QRL3 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC30.6■■■□□ 2.49
Ccdc88bQ4QRL3 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
Ccdc88bQ4QRL3 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
Ccdc88bQ4QRL3 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC30.6■■■□□ 2.49
Ccdc88bQ4QRL3 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Ccdc88bQ4QRL3 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
Ccdc88bQ4QRL3 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC30.59■■■□□ 2.49
Ccdc88bQ4QRL3 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Ccdc88bQ4QRL3 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC30.59■■■□□ 2.49
Ccdc88bQ4QRL3 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
Ccdc88bQ4QRL3 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC30.59■■■□□ 2.49
Ccdc88bQ4QRL3 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Ccdc88bQ4QRL3 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
Ccdc88bQ4QRL3 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Ccdc88bQ4QRL3 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC30.58■■■□□ 2.49
Ccdc88bQ4QRL3 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC30.58■■■□□ 2.49
Ccdc88bQ4QRL3 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
Ccdc88bQ4QRL3 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC30.58■■■□□ 2.49
Ccdc88bQ4QRL3 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC30.58■■■□□ 2.49
Ccdc88bQ4QRL3 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC30.58■■■□□ 2.49
Ccdc88bQ4QRL3 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC30.58■■■□□ 2.49
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms