Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Ppfia2-201ENSMUST00000029404 5429 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Cux1P53564 Ndp-201ENSMUST00000040134 1939 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Cux1P53564 Trpv1-202ENSMUST00000102526 3361 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Cux1P53564 Lilrb4a-203ENSMUST00000219696 1441 ntAPPRIS P5 TSL 1 (best) BASIC12□□□□□ -0.49
Cux1P53564 Cd300lb-201ENSMUST00000106581 2880 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Cux1P53564 Gm25757-201ENSMUST00000103986 123 ntBASIC12□□□□□ -0.49
Cux1P53564 Gm11903-201ENSMUST00000118958 727 ntBASIC12□□□□□ -0.49
Cux1P53564 Gm12720-201ENSMUST00000123834 472 ntTSL 2 BASIC12□□□□□ -0.49
Cux1P53564 Gm16540-201ENSMUST00000160263 426 ntTSL 5 BASIC12□□□□□ -0.49
Cux1P53564 AC101205.1-201ENSMUST00000227916 907 ntBASIC12□□□□□ -0.49
Cux1P53564 Gm19972-201ENSMUST00000218180 5664 ntBASIC12□□□□□ -0.49
Cux1P53564 D130040H23Rik-204ENSMUST00000212549 2002 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Cux1P53564 Il18bp-201ENSMUST00000094134 1311 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Cux1P53564 Gm14565-201ENSMUST00000140021 2494 ntTSL 1 (best) BASIC12□□□□□ -0.49
Cux1P53564 Ptges-202ENSMUST00000102852 3647 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Cux1P53564 Gpr152-201ENSMUST00000096338 3922 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Cux1P53564 Zfp638-201ENSMUST00000032088 6199 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Cux1P53564 Actr10-201ENSMUST00000021479 4022 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Cux1P53564 Tns1-201ENSMUST00000169786 9966 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Cux1P53564 Fam53a-203ENSMUST00000065162 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Cux1P53564 Zbtb14-202ENSMUST00000112674 3743 ntAPPRIS P1 TSL 3 BASIC11.99□□□□□ -0.49
Cux1P53564 Gm29154-211ENSMUST00000213655 1499 ntTSL 5 BASIC11.99□□□□□ -0.49
Cux1P53564 Acer2-201ENSMUST00000045224 4216 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Cux1P53564 Olfr26-201ENSMUST00000104874 931 ntAPPRIS P1 BASIC11.99□□□□□ -0.49
Cux1P53564 9630013K17Rik-201ENSMUST00000146915 1072 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Cux1P53564 Gm22847-201ENSMUST00000157707 105 ntBASIC11.99□□□□□ -0.49
Cux1P53564 Gm20452-201ENSMUST00000174686 513 ntBASIC11.99□□□□□ -0.49
Cux1P53564 Arhgap26-218ENSMUST00000187912 312 ntTSL 5 BASIC11.99□□□□□ -0.49
Cux1P53564 C430002N11Rik-202ENSMUST00000189067 1029 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Cux1P53564 Ltf-209ENSMUST00000198884 616 ntTSL 5 BASIC11.99□□□□□ -0.49
Cux1P53564 Gm44760-201ENSMUST00000206375 1173 ntBASIC11.99□□□□□ -0.49
Cux1P53564 4933431C10Rik-201ENSMUST00000208973 1266 ntBASIC11.99□□□□□ -0.49
Cux1P53564 Gm9249-201ENSMUST00000221420 578 ntBASIC11.99□□□□□ -0.49
Cux1P53564 AC118249.1-201ENSMUST00000224822 608 ntBASIC11.99□□□□□ -0.49
Cux1P53564 Cox20-201ENSMUST00000027781 471 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Cux1P53564 Olfr1504-201ENSMUST00000078282 1085 ntAPPRIS P1 BASIC11.99□□□□□ -0.49
Cux1P53564 Patj-206ENSMUST00000107033 3624 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Cux1P53564 Gm39244-201ENSMUST00000209663 1940 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Cux1P53564 Usp8-201ENSMUST00000028841 4145 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
Cux1P53564 AY702103-202ENSMUST00000180996 5876 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Cux1P53564 Cyp4a30b-201ENSMUST00000119958 1527 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Cux1P53564 Cabyr-204ENSMUST00000121018 1305 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Cux1P53564 Gm8362-201ENSMUST00000168790 1762 ntAPPRIS P5 TSL 5 BASIC11.99□□□□□ -0.49
Cux1P53564 2310015D24Rik-202ENSMUST00000187920 2917 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Cux1P53564 BC053393-201ENSMUST00000050937 2020 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Cux1P53564 Bcas3-205ENSMUST00000108061 3810 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Cux1P53564 Gm12295-201ENSMUST00000128453 3189 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Cux1P53564 Celf2-221ENSMUST00000182706 2525 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Cux1P53564 Inpp5d-201ENSMUST00000042275 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Cux1P53564 Tmem35a-201ENSMUST00000037687 1918 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Cux1P53564 Sulf1-203ENSMUST00000180062 4636 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Cux1P53564 Zdbf2-202ENSMUST00000114132 12629 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Cux1P53564 Ston1-201ENSMUST00000064035 3287 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
Cux1P53564 Acvr1-202ENSMUST00000090935 3293 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Cux1P53564 Eif3m-202ENSMUST00000111110 817 ntTSL 5 BASIC11.98□□□□□ -0.49
Cux1P53564 Gm14279-201ENSMUST00000117142 332 ntBASIC11.98□□□□□ -0.49
Cux1P53564 Rpl35a-ps2-201ENSMUST00000117444 333 ntBASIC11.98□□□□□ -0.49
Cux1P53564 Gm10243-201ENSMUST00000117571 333 ntBASIC11.98□□□□□ -0.49
Cux1P53564 Gm15644-201ENSMUST00000121764 387 ntBASIC11.98□□□□□ -0.49
Cux1P53564 Rpl35a-ps4-201ENSMUST00000121779 333 ntBASIC11.98□□□□□ -0.49
Cux1P53564 Gm13776-201ENSMUST00000122236 1261 ntBASIC11.98□□□□□ -0.49
Cux1P53564 Gm2735-201ENSMUST00000136133 277 ntBASIC11.98□□□□□ -0.49
Cux1P53564 Rpl35a-ps3-201ENSMUST00000147311 333 ntBASIC11.98□□□□□ -0.49
Cux1P53564 Rpl35a-ps6-201ENSMUST00000148282 333 ntBASIC11.98□□□□□ -0.49
Cux1P53564 Gm15624-202ENSMUST00000154953 713 ntTSL 2 BASIC11.98□□□□□ -0.49
Cux1P53564 Rps19-ps8-201ENSMUST00000180714 422 ntBASIC11.98□□□□□ -0.49
Cux1P53564 Rnf212-202ENSMUST00000196652 853 ntTSL 2 BASIC11.98□□□□□ -0.49
Cux1P53564 Olfr1357-203ENSMUST00000205085 1012 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
Cux1P53564 Gm45666-201ENSMUST00000211474 277 ntTSL 5 BASIC11.98□□□□□ -0.49
Cux1P53564 Gm31763-203ENSMUST00000219739 1025 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Cux1P53564 AC124397.1-201ENSMUST00000224296 653 ntBASIC11.98□□□□□ -0.49
Cux1P53564 AC131117.2-202ENSMUST00000224539 547 ntBASIC11.98□□□□□ -0.49
Cux1P53564 AC110176.1-201ENSMUST00000226219 504 ntBASIC11.98□□□□□ -0.49
Cux1P53564 AC158981.1-201ENSMUST00000226943 1205 ntBASIC11.98□□□□□ -0.49
Cux1P53564 AC122397.3-201ENSMUST00000227097 527 ntBASIC11.98□□□□□ -0.49
Cux1P53564 Rps27rt-201ENSMUST00000053150 374 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
Cux1P53564 Gm10247-201ENSMUST00000090395 333 ntBASIC11.98□□□□□ -0.49
Cux1P53564 Vmn1r198-201ENSMUST00000091733 903 ntAPPRIS P2 BASIC11.98□□□□□ -0.49
Cux1P53564 Adra1a-201ENSMUST00000054661 4137 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Cux1P53564 Taf1-202ENSMUST00000118878 7210 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Cux1P53564 Slc39a9-201ENSMUST00000085245 5201 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Cux1P53564 Stk36-201ENSMUST00000087183 5245 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Cux1P53564 Olfr1395-202ENSMUST00000203377 2883 ntAPPRIS P1 TSL 3 BASIC11.98□□□□□ -0.49
Cux1P53564 Pcsk2-201ENSMUST00000028905 4723 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Cux1P53564 Cspp1-217ENSMUST00000186294 3429 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Cux1P53564 Palb2-202ENSMUST00000098068 3750 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Cux1P53564 Arhgef9-210ENSMUST00000182001 4622 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Cux1P53564 Gm3294-201ENSMUST00000164104 7367 ntTSL 3 BASIC11.98□□□□□ -0.49
Cux1P53564 C230079O03Rik-201ENSMUST00000209560 1385 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Cux1P53564 Umodl1-201ENSMUST00000066554 5007 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Cux1P53564 Erbb3-201ENSMUST00000082059 6016 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Cux1P53564 Rgs22-203ENSMUST00000172831 4006 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Cux1P53564 Nsun2-201ENSMUST00000022087 4164 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Cux1P53564 Sfi1-210ENSMUST00000140846 3604 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Cux1P53564 Pcdh10-202ENSMUST00000170695 8234 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
Cux1P53564 Tshz2-201ENSMUST00000109157 5083 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
Cux1P53564 Gm25631-201ENSMUST00000104390 130 ntBASIC11.97□□□□□ -0.49
Cux1P53564 Cox7c-204ENSMUST00000132233 709 ntTSL 2 BASIC11.97□□□□□ -0.49
Cux1P53564 Gm14401-204ENSMUST00000134614 973 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
Cux1P53564 Gm20637-201ENSMUST00000175715 462 ntBASIC11.97□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 76.4 ms