Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Upf3aQ3ULJ3 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Upf3aQ3ULJ3 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Upf3aQ3ULJ3 Gm5540-201ENSMUST00000131852 1848 ntBASIC19.79■□□□□ 0.76
Upf3aQ3ULJ3 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC19.78■□□□□ 0.76
Upf3aQ3ULJ3 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Upf3aQ3ULJ3 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Upf3aQ3ULJ3 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Upf3aQ3ULJ3 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Upf3aQ3ULJ3 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Upf3aQ3ULJ3 Gm15847-201ENSMUST00000121417 1065 ntBASIC19.78■□□□□ 0.76
Upf3aQ3ULJ3 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
Upf3aQ3ULJ3 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC19.78■□□□□ 0.76
Upf3aQ3ULJ3 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Upf3aQ3ULJ3 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
Upf3aQ3ULJ3 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Upf3aQ3ULJ3 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Upf3aQ3ULJ3 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Upf3aQ3ULJ3 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Upf3aQ3ULJ3 Gm715-201ENSMUST00000117865 831 ntBASIC19.77■□□□□ 0.76
Upf3aQ3ULJ3 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Upf3aQ3ULJ3 Gm22325-201ENSMUST00000158904 308 ntBASIC19.77■□□□□ 0.76
Upf3aQ3ULJ3 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Upf3aQ3ULJ3 AC153881.1-201ENSMUST00000214448 284 ntBASIC19.77■□□□□ 0.76
Upf3aQ3ULJ3 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Upf3aQ3ULJ3 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
Upf3aQ3ULJ3 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Upf3aQ3ULJ3 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Upf3aQ3ULJ3 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Upf3aQ3ULJ3 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Upf3aQ3ULJ3 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
Upf3aQ3ULJ3 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Upf3aQ3ULJ3 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Upf3aQ3ULJ3 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Upf3aQ3ULJ3 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Upf3aQ3ULJ3 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Upf3aQ3ULJ3 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Upf3aQ3ULJ3 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Upf3aQ3ULJ3 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Upf3aQ3ULJ3 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
Upf3aQ3ULJ3 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Upf3aQ3ULJ3 AC140264.2-202ENSMUST00000218746 817 ntBASIC19.76■□□□□ 0.75
Upf3aQ3ULJ3 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Upf3aQ3ULJ3 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Upf3aQ3ULJ3 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Upf3aQ3ULJ3 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Upf3aQ3ULJ3 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Upf3aQ3ULJ3 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
Upf3aQ3ULJ3 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Upf3aQ3ULJ3 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Upf3aQ3ULJ3 Gm15378-201ENSMUST00000121894 207 ntBASIC19.75■□□□□ 0.75
Upf3aQ3ULJ3 H2-K2-201ENSMUST00000174250 1049 ntBASIC19.75■□□□□ 0.75
Upf3aQ3ULJ3 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC19.75■□□□□ 0.75
Upf3aQ3ULJ3 AL672049.1-201ENSMUST00000197943 91 ntBASIC19.75■□□□□ 0.75
Upf3aQ3ULJ3 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Upf3aQ3ULJ3 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Upf3aQ3ULJ3 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Upf3aQ3ULJ3 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Upf3aQ3ULJ3 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Upf3aQ3ULJ3 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Upf3aQ3ULJ3 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
Upf3aQ3ULJ3 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC19.74■□□□□ 0.75
Upf3aQ3ULJ3 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Upf3aQ3ULJ3 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Upf3aQ3ULJ3 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Upf3aQ3ULJ3 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Upf3aQ3ULJ3 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Upf3aQ3ULJ3 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Upf3aQ3ULJ3 Gm13158-201ENSMUST00000122007 736 ntBASIC19.74■□□□□ 0.75
Upf3aQ3ULJ3 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC19.74■□□□□ 0.75
Upf3aQ3ULJ3 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC19.74■□□□□ 0.75
Upf3aQ3ULJ3 Gm7977-201ENSMUST00000193787 748 ntBASIC19.74■□□□□ 0.75
Upf3aQ3ULJ3 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Upf3aQ3ULJ3 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Upf3aQ3ULJ3 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Upf3aQ3ULJ3 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Upf3aQ3ULJ3 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Upf3aQ3ULJ3 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC19.73■□□□□ 0.75
Upf3aQ3ULJ3 AC163280.1-201ENSMUST00000228194 1100 ntBASIC19.73■□□□□ 0.75
Upf3aQ3ULJ3 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Upf3aQ3ULJ3 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
Upf3aQ3ULJ3 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Upf3aQ3ULJ3 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Upf3aQ3ULJ3 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Upf3aQ3ULJ3 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Upf3aQ3ULJ3 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Upf3aQ3ULJ3 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Upf3aQ3ULJ3 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Upf3aQ3ULJ3 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC19.72■□□□□ 0.75
Upf3aQ3ULJ3 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Upf3aQ3ULJ3 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Upf3aQ3ULJ3 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Upf3aQ3ULJ3 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Upf3aQ3ULJ3 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Upf3aQ3ULJ3 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Upf3aQ3ULJ3 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Upf3aQ3ULJ3 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Upf3aQ3ULJ3 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Upf3aQ3ULJ3 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Upf3aQ3ULJ3 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC19.71■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 40.6 ms