Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC15.85■□□□□ 0.13
Col7a1Q63870 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC15.85■□□□□ 0.13
Col7a1Q63870 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col7a1Q63870 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col7a1Q63870 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Col7a1Q63870 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col7a1Q63870 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
Col7a1Q63870 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Col7a1Q63870 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col7a1Q63870 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Col7a1Q63870 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Col7a1Q63870 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col7a1Q63870 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Col7a1Q63870 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
Col7a1Q63870 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC15.84■□□□□ 0.13
Col7a1Q63870 Gm22697-201ENSMUST00000175194 63 ntBASIC15.84■□□□□ 0.13
Col7a1Q63870 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col7a1Q63870 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col7a1Q63870 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col7a1Q63870 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Col7a1Q63870 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Col7a1Q63870 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
Col7a1Q63870 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Col7a1Q63870 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Col7a1Q63870 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Col7a1Q63870 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC15.83■□□□□ 0.12
Col7a1Q63870 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Col7a1Q63870 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col7a1Q63870 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC15.83■□□□□ 0.12
Col7a1Q63870 Cdkn3-203ENSMUST00000227149 1952 ntBASIC15.83■□□□□ 0.12
Col7a1Q63870 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Col7a1Q63870 Gm42545-201ENSMUST00000202755 922 ntBASIC15.83■□□□□ 0.12
Col7a1Q63870 AC154266.1-201ENSMUST00000223190 503 ntBASIC15.83■□□□□ 0.12
Col7a1Q63870 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC15.83■□□□□ 0.12
Col7a1Q63870 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Col7a1Q63870 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC15.82■□□□□ 0.12
Col7a1Q63870 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col7a1Q63870 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC15.82■□□□□ 0.12
Col7a1Q63870 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col7a1Q63870 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Col7a1Q63870 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col7a1Q63870 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col7a1Q63870 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Col7a1Q63870 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Col7a1Q63870 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Col7a1Q63870 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col7a1Q63870 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col7a1Q63870 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
Col7a1Q63870 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col7a1Q63870 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col7a1Q63870 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Col7a1Q63870 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col7a1Q63870 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
Col7a1Q63870 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC15.81■□□□□ 0.12
Col7a1Q63870 Gm43183-201ENSMUST00000200632 547 ntBASIC15.81■□□□□ 0.12
Col7a1Q63870 Gm45058-201ENSMUST00000205810 766 ntBASIC15.81■□□□□ 0.12
Col7a1Q63870 Gm17807-201ENSMUST00000186869 298 ntBASIC15.81■□□□□ 0.12
Col7a1Q63870 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col7a1Q63870 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
Col7a1Q63870 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC15.8■□□□□ 0.12
Col7a1Q63870 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Col7a1Q63870 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Col7a1Q63870 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC15.8■□□□□ 0.12
Col7a1Q63870 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col7a1Q63870 Gm5913-201ENSMUST00000119397 1399 ntBASIC15.8■□□□□ 0.12
Col7a1Q63870 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
Col7a1Q63870 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col7a1Q63870 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col7a1Q63870 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Col7a1Q63870 AA386476-201ENSMUST00000098781 1665 ntBASIC15.79■□□□□ 0.12
Col7a1Q63870 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col7a1Q63870 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Col7a1Q63870 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC15.79■□□□□ 0.12
Col7a1Q63870 AC164629.2-201ENSMUST00000217916 270 ntBASIC15.79■□□□□ 0.12
Col7a1Q63870 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col7a1Q63870 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col7a1Q63870 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col7a1Q63870 Gm11927-201ENSMUST00000118472 759 ntBASIC15.79■□□□□ 0.12
Col7a1Q63870 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Col7a1Q63870 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Col7a1Q63870 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col7a1Q63870 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Col7a1Q63870 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col7a1Q63870 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC15.78■□□□□ 0.12
Col7a1Q63870 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC15.78■□□□□ 0.12
Col7a1Q63870 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC15.78■□□□□ 0.12
Col7a1Q63870 Mzt1-203ENSMUST00000227948 952 ntBASIC15.78■□□□□ 0.12
Col7a1Q63870 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col7a1Q63870 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col7a1Q63870 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col7a1Q63870 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col7a1Q63870 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col7a1Q63870 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col7a1Q63870 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col7a1Q63870 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col7a1Q63870 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC15.78■□□□□ 0.12
Col7a1Q63870 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Col7a1Q63870 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col7a1Q63870 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col7a1Q63870 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms