Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Hmgb3O54879 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Hmgb3O54879 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb3O54879 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb3O54879 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb3O54879 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
Hmgb3O54879 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb3O54879 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb3O54879 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb3O54879 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb3O54879 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb3O54879 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb3O54879 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb3O54879 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
Hmgb3O54879 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb3O54879 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb3O54879 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb3O54879 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb3O54879 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb3O54879 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb3O54879 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb3O54879 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC15.61■□□□□ 0.09
Hmgb3O54879 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb3O54879 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC15.61■□□□□ 0.09
Hmgb3O54879 Mir6236-201ENSMUST00000184437 123 ntBASIC15.61■□□□□ 0.09
Hmgb3O54879 Gm10399-202ENSMUST00000202768 748 ntBASIC15.61■□□□□ 0.09
Hmgb3O54879 Gm7143-201ENSMUST00000222811 859 ntBASIC15.61■□□□□ 0.09
Hmgb3O54879 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb3O54879 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb3O54879 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
Hmgb3O54879 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb3O54879 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb3O54879 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb3O54879 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
Hmgb3O54879 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb3O54879 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb3O54879 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb3O54879 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb3O54879 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb3O54879 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb3O54879 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb3O54879 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb3O54879 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb3O54879 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC15.6■□□□□ 0.09
Hmgb3O54879 Grk6-206ENSMUST00000224995 2971 ntBASIC15.6■□□□□ 0.09
Hmgb3O54879 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb3O54879 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
Hmgb3O54879 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb3O54879 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb3O54879 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC15.6■□□□□ 0.09
Hmgb3O54879 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb3O54879 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb3O54879 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Hmgb3O54879 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Hmgb3O54879 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC15.59■□□□□ 0.09
Hmgb3O54879 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Hmgb3O54879 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Hmgb3O54879 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Hmgb3O54879 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Hmgb3O54879 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Hmgb3O54879 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Hmgb3O54879 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Hmgb3O54879 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Hmgb3O54879 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
Hmgb3O54879 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC15.59■□□□□ 0.09
Hmgb3O54879 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Hmgb3O54879 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
Hmgb3O54879 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Hmgb3O54879 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
Hmgb3O54879 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC15.59■□□□□ 0.09
Hmgb3O54879 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Hmgb3O54879 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC15.59■□□□□ 0.09
Hmgb3O54879 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Hmgb3O54879 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Hmgb3O54879 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Hmgb3O54879 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Hmgb3O54879 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Hmgb3O54879 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Hmgb3O54879 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Hmgb3O54879 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
Hmgb3O54879 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Hmgb3O54879 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC15.58■□□□□ 0.08
Hmgb3O54879 Gm45444-201ENSMUST00000211394 898 ntBASIC15.58■□□□□ 0.08
Hmgb3O54879 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC15.58■□□□□ 0.08
Hmgb3O54879 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC15.58■□□□□ 0.08
Hmgb3O54879 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Hmgb3O54879 Gm18688-201ENSMUST00000204695 1859 ntBASIC15.58■□□□□ 0.08
Hmgb3O54879 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC15.58■□□□□ 0.08
Hmgb3O54879 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
Hmgb3O54879 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
Hmgb3O54879 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Hmgb3O54879 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Hmgb3O54879 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC15.58■□□□□ 0.08
Hmgb3O54879 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Hmgb3O54879 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Hmgb3O54879 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Hmgb3O54879 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
Hmgb3O54879 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Hmgb3O54879 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Hmgb3O54879 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms