Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Smc1aQ9CU62 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Smc1aQ9CU62 Gm43182-201ENSMUST00000199476 2528 ntBASIC20.99■□□□□ 0.95
Smc1aQ9CU62 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Smc1aQ9CU62 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
Smc1aQ9CU62 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC20.99■□□□□ 0.95
Smc1aQ9CU62 Mir6236-201ENSMUST00000184437 123 ntBASIC20.99■□□□□ 0.95
Smc1aQ9CU62 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Smc1aQ9CU62 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Smc1aQ9CU62 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Smc1aQ9CU62 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Smc1aQ9CU62 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Smc1aQ9CU62 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Smc1aQ9CU62 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Smc1aQ9CU62 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Smc1aQ9CU62 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Smc1aQ9CU62 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
Smc1aQ9CU62 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC20.98■□□□□ 0.95
Smc1aQ9CU62 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Smc1aQ9CU62 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Smc1aQ9CU62 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Smc1aQ9CU62 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Smc1aQ9CU62 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Smc1aQ9CU62 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Smc1aQ9CU62 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Smc1aQ9CU62 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC20.97■□□□□ 0.95
Smc1aQ9CU62 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Smc1aQ9CU62 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Smc1aQ9CU62 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
Smc1aQ9CU62 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Smc1aQ9CU62 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC20.97■□□□□ 0.95
Smc1aQ9CU62 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Smc1aQ9CU62 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC20.97■□□□□ 0.95
Smc1aQ9CU62 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC20.97■□□□□ 0.95
Smc1aQ9CU62 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Smc1aQ9CU62 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Smc1aQ9CU62 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Smc1aQ9CU62 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Smc1aQ9CU62 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
Smc1aQ9CU62 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Smc1aQ9CU62 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
Smc1aQ9CU62 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Smc1aQ9CU62 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Smc1aQ9CU62 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Smc1aQ9CU62 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Smc1aQ9CU62 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Smc1aQ9CU62 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Smc1aQ9CU62 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC20.96■□□□□ 0.95
Smc1aQ9CU62 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Smc1aQ9CU62 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC20.96■□□□□ 0.95
Smc1aQ9CU62 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Smc1aQ9CU62 Gm9988-201ENSMUST00000069786 435 ntBASIC20.96■□□□□ 0.95
Smc1aQ9CU62 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Smc1aQ9CU62 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Smc1aQ9CU62 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC20.96■□□□□ 0.95
Smc1aQ9CU62 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Smc1aQ9CU62 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Smc1aQ9CU62 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Smc1aQ9CU62 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Smc1aQ9CU62 Gm27011-201ENSMUST00000182352 972 ntBASIC20.95■□□□□ 0.94
Smc1aQ9CU62 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Smc1aQ9CU62 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC20.95■□□□□ 0.94
Smc1aQ9CU62 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
Smc1aQ9CU62 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
Smc1aQ9CU62 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Smc1aQ9CU62 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Smc1aQ9CU62 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Smc1aQ9CU62 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Smc1aQ9CU62 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
Smc1aQ9CU62 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC20.94■□□□□ 0.94
Smc1aQ9CU62 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC20.94■□□□□ 0.94
Smc1aQ9CU62 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Smc1aQ9CU62 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Smc1aQ9CU62 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Smc1aQ9CU62 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Smc1aQ9CU62 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Smc1aQ9CU62 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Smc1aQ9CU62 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
Smc1aQ9CU62 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC20.93■□□□□ 0.94
Smc1aQ9CU62 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
Smc1aQ9CU62 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Smc1aQ9CU62 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Smc1aQ9CU62 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC20.93■□□□□ 0.94
Smc1aQ9CU62 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Smc1aQ9CU62 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC20.93■□□□□ 0.94
Smc1aQ9CU62 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Smc1aQ9CU62 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Smc1aQ9CU62 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
Smc1aQ9CU62 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Smc1aQ9CU62 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Smc1aQ9CU62 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC20.92■□□□□ 0.94
Smc1aQ9CU62 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Smc1aQ9CU62 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Smc1aQ9CU62 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
Smc1aQ9CU62 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Smc1aQ9CU62 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Smc1aQ9CU62 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC20.92■□□□□ 0.94
Smc1aQ9CU62 Gm43231-201ENSMUST00000202960 2258 ntBASIC20.92■□□□□ 0.94
Smc1aQ9CU62 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Smc1aQ9CU62 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms