Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Use1Q9CQ56 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Use1Q9CQ56 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Use1Q9CQ56 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Use1Q9CQ56 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC17.82■□□□□ 0.44
Use1Q9CQ56 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC17.82■□□□□ 0.44
Use1Q9CQ56 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Use1Q9CQ56 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC17.82■□□□□ 0.44
Use1Q9CQ56 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC17.82■□□□□ 0.44
Use1Q9CQ56 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Use1Q9CQ56 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Use1Q9CQ56 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Use1Q9CQ56 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Use1Q9CQ56 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Use1Q9CQ56 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Use1Q9CQ56 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Use1Q9CQ56 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Use1Q9CQ56 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Use1Q9CQ56 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Use1Q9CQ56 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Use1Q9CQ56 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Use1Q9CQ56 Rncr4-201ENSMUST00000194541 2234 ntBASIC17.81■□□□□ 0.44
Use1Q9CQ56 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Use1Q9CQ56 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Use1Q9CQ56 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Use1Q9CQ56 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Use1Q9CQ56 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC17.8■□□□□ 0.44
Use1Q9CQ56 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Use1Q9CQ56 Gm6627-201ENSMUST00000218299 2386 ntBASIC17.8■□□□□ 0.44
Use1Q9CQ56 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Use1Q9CQ56 Gm43137-201ENSMUST00000198052 594 ntBASIC17.8■□□□□ 0.44
Use1Q9CQ56 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Use1Q9CQ56 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Use1Q9CQ56 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Use1Q9CQ56 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Use1Q9CQ56 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
Use1Q9CQ56 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Use1Q9CQ56 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Use1Q9CQ56 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Use1Q9CQ56 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Use1Q9CQ56 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Use1Q9CQ56 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Use1Q9CQ56 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
Use1Q9CQ56 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Use1Q9CQ56 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Use1Q9CQ56 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Use1Q9CQ56 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Use1Q9CQ56 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Use1Q9CQ56 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Use1Q9CQ56 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Use1Q9CQ56 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Use1Q9CQ56 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Use1Q9CQ56 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Use1Q9CQ56 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Use1Q9CQ56 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Use1Q9CQ56 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Use1Q9CQ56 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Use1Q9CQ56 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Use1Q9CQ56 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Use1Q9CQ56 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Use1Q9CQ56 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
Use1Q9CQ56 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Use1Q9CQ56 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Use1Q9CQ56 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Use1Q9CQ56 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Use1Q9CQ56 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC17.78■□□□□ 0.44
Use1Q9CQ56 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Use1Q9CQ56 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Use1Q9CQ56 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Use1Q9CQ56 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
Use1Q9CQ56 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Use1Q9CQ56 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Use1Q9CQ56 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Use1Q9CQ56 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC17.78■□□□□ 0.44
Use1Q9CQ56 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Use1Q9CQ56 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Use1Q9CQ56 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Use1Q9CQ56 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Use1Q9CQ56 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC17.77■□□□□ 0.44
Use1Q9CQ56 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Use1Q9CQ56 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Use1Q9CQ56 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
Use1Q9CQ56 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Use1Q9CQ56 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Use1Q9CQ56 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Use1Q9CQ56 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC17.77■□□□□ 0.44
Use1Q9CQ56 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Use1Q9CQ56 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC17.77■□□□□ 0.44
Use1Q9CQ56 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Use1Q9CQ56 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Use1Q9CQ56 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Use1Q9CQ56 Gm5540-201ENSMUST00000131852 1848 ntBASIC17.77■□□□□ 0.43
Use1Q9CQ56 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Use1Q9CQ56 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Use1Q9CQ56 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Use1Q9CQ56 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC17.76■□□□□ 0.43
Use1Q9CQ56 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Use1Q9CQ56 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Use1Q9CQ56 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Use1Q9CQ56 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC17.76■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 16.6 ms