Protein–RNA interactions for Protein: P70354

Msx3, Homeobox protein MSX-3, mousemouse

Predictions only

Length 204 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx3P70354 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Msx3P70354 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Msx3P70354 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC19.43■□□□□ 0.7
Msx3P70354 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Msx3P70354 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC19.43■□□□□ 0.7
Msx3P70354 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Msx3P70354 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Msx3P70354 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Msx3P70354 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC19.42■□□□□ 0.7
Msx3P70354 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Msx3P70354 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Msx3P70354 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Msx3P70354 Gm14281-201ENSMUST00000121700 1294 ntBASIC19.42■□□□□ 0.7
Msx3P70354 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Msx3P70354 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Msx3P70354 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Msx3P70354 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC19.42■□□□□ 0.7
Msx3P70354 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Msx3P70354 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Msx3P70354 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Msx3P70354 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Msx3P70354 Rncr4-201ENSMUST00000194541 2234 ntBASIC19.41■□□□□ 0.7
Msx3P70354 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Msx3P70354 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Msx3P70354 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Msx3P70354 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Msx3P70354 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC19.41■□□□□ 0.7
Msx3P70354 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Msx3P70354 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Msx3P70354 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Msx3P70354 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Msx3P70354 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Msx3P70354 Gm43060-201ENSMUST00000200621 289 ntBASIC19.41■□□□□ 0.7
Msx3P70354 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Msx3P70354 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Msx3P70354 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Msx3P70354 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Msx3P70354 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Msx3P70354 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Msx3P70354 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Msx3P70354 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Msx3P70354 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Msx3P70354 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Msx3P70354 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Msx3P70354 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Msx3P70354 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Msx3P70354 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Msx3P70354 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Msx3P70354 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Msx3P70354 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Msx3P70354 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Msx3P70354 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Msx3P70354 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Msx3P70354 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Msx3P70354 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Msx3P70354 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Msx3P70354 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Msx3P70354 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Msx3P70354 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Msx3P70354 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Msx3P70354 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Msx3P70354 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Msx3P70354 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC19.39■□□□□ 0.69
Msx3P70354 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC19.39■□□□□ 0.69
Msx3P70354 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Msx3P70354 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Msx3P70354 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC19.39■□□□□ 0.69
Msx3P70354 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Msx3P70354 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Msx3P70354 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Msx3P70354 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Msx3P70354 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Msx3P70354 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Msx3P70354 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Msx3P70354 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Msx3P70354 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Msx3P70354 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Msx3P70354 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Msx3P70354 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Msx3P70354 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC19.38■□□□□ 0.69
Msx3P70354 Gm9885-202ENSMUST00000186234 2209 ntBASIC19.38■□□□□ 0.69
Msx3P70354 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
Msx3P70354 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC19.38■□□□□ 0.69
Msx3P70354 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Msx3P70354 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Msx3P70354 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Msx3P70354 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Msx3P70354 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Msx3P70354 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Msx3P70354 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Msx3P70354 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Msx3P70354 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Msx3P70354 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Msx3P70354 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC19.37■□□□□ 0.69
Msx3P70354 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Msx3P70354 Gm27032-201ENSMUST00000183124 1116 ntBASIC19.37■□□□□ 0.69
Msx3P70354 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Msx3P70354 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Msx3P70354 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Msx3P70354 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 21.8 ms